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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCCATGCCGGATTATTCAACCTCTGTGTAGTAGTTCTTATTGCTGTAAACAGTAGACTCATCATCGAAAATCTTATGAAGgtttgctgttacttgtttctccttttaggaattgaattgcttgaaaatttatcagagacgaataactttgttgttgctatcattcatgtag

Basic information

species Arabidopsis thaliana
transcript AT2G19450.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G19450.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA13G16560.1 (Glycine max), 5'ss of exon 2
AGCCATGCCGGATTATTCAACCTCTGTGTAGTAGTTCTTATTGCTGTAAACAGTAGACTCATCATCGAAAATCTTATGAAGgtttgctgttacttgtttctccttttaggaattgaattgcttgaaaatt---tatcagagacgaataactttgttgttgctatcattcatgtag------------------------------------
|| || || ||  | |||||||||||| ||||||| ||| ||||||| || ||  |||||||||| || ||| | ||||||||||  ||   |||   | |    ||  | ||| |  |||   ||  ||   |       |   || || ||| | |||          | | |                                    
AGTCACGCGGGCCTCTTCAACCTCTGTATAGTAGTCCTTGTTGCTGTGAATAGCCGACTCATCATTGAGAATTTAATGAAGgttt--tgcctcttccatgtttaattgtgcattcacctgcaacaattttctgttctttttatttatgaccttgattttgacggttcgggttttgttgtctgctttaatgagtgttttatttgttctgcag

upper sequence: AT2G19450.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv11s0016g01930.t01 (Vitis vinifera), 5'ss of exon 2
AGCCATGCCGGATTATTCAACCTCTGTGTAGTAGTTCTTATTGCTGTAAACAGTAGACTCATCATCGAAAATCTTATGAAGgtttgctgttacttgtttctccttttaggaattgaattgcttgaaaatttatcaga---gacgaataactttgttgttgct-atcattcatgtag-----------------------------------------------------------------------------------------
|| ||||| ||  | |||||||||||| ||||||| ||| | |||||||||||  | || ||||| || |||||||||||||||||      | |   |||  |   |  |||  | |||  ||   |||| |   |    | | ||   ||| |||||  | ||   | |                                                                                              
AGTCATGCGGGTCTCTTCAACCTCTGTATAGTAGTGCTTGTAGCTGTAAACAGCCGGCTTATCATTGAGAATCTTATGAAGgtttgtcac--cctccatctaatacgatcaatccagttggatggtgatttctataatttaatgcatgtatttcttgttttttatagctgactcttaaatttcattttaaatcttgacacatcatttcttaaaaataattttgagcctacagctataggcagcttatctctcattgttgttgcag