1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
ATCAGATGGGTTACAACCACATTTGATTAACATTCAATTCCAGAAGAAAGTGAAACTGCAGgtatgattctattttcatgagaaagttttcatctttctttttttgtggttaatgaattttggcttgttttgattttgaaag
species | Arabidopsis thaliana |
transcript | AT2G18290.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TACAACCACATTTGATTAACATTCAATTCCAGAAGAAAGTGAAACTGCAG TTAGTGGTTTTGTACGTTGACTTTAAGCTTGATGAGAGCTATACACCAAGTEST: gi|86079120|gb|DR374877.1|DR374877
genomic: TACAACCACATTTGATTAACATTCAATTCCAGAAGAAAGTGAAACTGCAGgtatgattct ... attttgaaagTTAGTGGTTTTGTACGTTGACTTTAAGCTTGATGAGAGCTATACACCAAGT
EST: TACAACCACATTTGATTAACATTCAATTCCAGAAGAAAGTGAAACTGCAG TTAGTGGTTTTGTACGTTGACTTTAAGCTTGATGAGAGCTATACACCAAGTEST: gi|19877766|gb|AU238597.1|AU238597
genomic: TACAACCACATTTGATTAACATTCAATTCCAGAAGAAAGTGAAACTGCAGgtatgattct ... attttgaaagTTAGTGGTTTTGTACGTTGACTTTAAGCTTGATGAGAGCTATACACCAAGT
EST: TACAACCACATTTGATTAACATTCAATTCCAGAAGAAAGTGAAACTGCAG TTAGTGGTTTTGTACGTTGACTTTAAGCTTGATGAGAGCTATACACCAAGT
genomic: TACAACCACATTTGATTAACATTCAATTCCAGAAGAAAGTGAAACTGCAGgtatgattct ... attttgaaagTTAGTGGTTTTGTACGTTGACTTTAAGCTTGATGAGAGCTATACACCAAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCAGATGGGTTACAACCACATTTGATTAACATTCAATTCCAGAAGAAAGTGAAACTGCAGgtatgattctattttcatgagaaagttttcatctttctttttttgtggttaatgaattttggcttgttttgattttgaaag
- - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG