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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGACGCGGAGGAGTTAAAGGTGGTTGATGCATTCCGCCAAGTGCTTATTCTCGATGAACTACTTCCGGACAAACATGATGATTACCATATGATGCTTAGgtctatcttggaatatatcatgccaatgtgcatctatgtccattattagcttgaatgtttcttcatttttcag

Basic information

species Arabidopsis thaliana
transcript AT2G18180.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G18180.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA01G37640.1 (Glycine max), 5'ss of exon 1
ATGACGCGGAGGAGTTAAAGGTGGTTGATGCATTCCGCCAAGTGCTTATTCTCGATGAACTACTTCCGGACAAACATGATGATTACCATATGATGCTTAGgtctatcttggaatatatcatgccaatgtgc-atctatgtccattattagcttgaatgtttcttcatttttcag--------------------------
| || || |||||||| ||  | |||||||  ||||| ||||  |||||| | || ||||| ||||| |  ||||| |||||||| ||||||||||||||||||   ||      |||  |     |  |  ||  ||    ||| |  || |     | ||  |   ||                              
ACGATGCTGAGGAGTTGAAAATAGTTGATGAGTTCCGTCAAGCTCTTATTTTGGACGAACTTCTTCCTGCAAAACACGATGATTATCATATGATGCTTAGgtcttgtttccttcctatgtttttcgttcgtgattgatccggattctctgcattcgcatctcaacgcattcacacattaagatgaaaaatggacgactca

upper sequence: AT2G18180.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA11G07660.1 (Glycine max), 5'ss of exon 1
ATGACGCGGAGGAGTTAAAGGTGGTTGATGCATTCCGCCAAGTGCTTATTCTCGATGAACTACTTCCGGACAAACATGATGATTACCATATGATGCTTAGgtctatcttggaatatat-catgccaatgtgcatctatgtccatta----ttagcttgaatgtttcttcatttttcag----------------------
| || || |||||||| ||  | ||||| |  ||||| ||||  |||||| | || ||||| ||||| |  ||||| |||||||| |||||||||||||||||| | ||      ||| | |  |    |  |||    | |  |      |    | || |  |   ||  ||                          
ACGATGCTGAGGAGTTGAAAATTGTTGACGAGTTCCGTCAAGCTCTTATTTTGGACGAACTTCTTCCTGCAAAACACGATGATTATCATATGATGCTTAGgtctcttttccttcctatgcttttcgtgattgatccggattctctgcattctcatctcaacgcattcacacattcagatgaagaatggacgcctcatatt