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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACTCGAATAATCTGAAAGATGCTCTCAAGTATTCGGCTCAGATGCTAAGCGAGTTACGGACTTCGAAGCTATCACCTCACAAGTACTATGATCTATgtgagttgtttccgtcttctgatctaccttgatcatatttatttcgctcaatcccttaattgacttaatagggttttgtttgtgatctgatttgatggtttttag

Basic information

species Arabidopsis thaliana
transcript AT2G17790.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G17790.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: LOC_Os03g58700.1 (Oryza sativa), 5'ss of exon 2
GACTCGAATAATCTGAAAGATGCTCTCAAGTATTCGGCTCAGATGCTAAGCGAGTTACGGACTTCGAAGCTATCACCTCACAAGTACTATGATCTATgtgagttgtttccgtcttctgatctaccttgatcatatttatttcgctcaatcccttaattg--acttaatagggttttgtttgtgatctgatttgatggtttttag
|| ||||| || || || ||||| |||||||| ||||| ||||||||   |||| | ||||| |||  ||| || || |||||||| ||||||||||||||||  ||    | |       | |||   |       |||| |         | |  ||  | || || ||| ||| ||  |  | || |              
GATTCGAACAACCTCAAGGATGCGCTCAAGTACTCGGCGCAGATGCTCTCCGAGCTGCGGACCTCGCGGCTCTCGCCGCACAAGTATTATGATCTATgtgagtgtttcttatgtgtcaggattcctcagtgcgcccaattttggctgtggtttcagctgggatttgatgggggtttattgat--tttgctgcag----------

upper sequence: AT2G17790.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA11G08390.1 (Glycine max), 5'ss of exon 2
GACTCGAATAATCTGAAAGATGCTCTCAAGTATTCGGCTCAGATGCTAAGCGAGTTACGGACTTCGAAGCTATCACCTCACAAGTACTATGATCTATgtgagttgtttccgtcttctgatctaccttgatcatatttatttcgctcaatcccttaattgactt----aatagggtt--ttgtttgtgatctgatttgatggtttttag--------
|||||||| ||||| |  |||||| | ||||||||||||||||||||   |||| |  ||||||| ||||| || |||||||||||||| || |||||| ||||  || |    || |||| ||| | ||| | |||  |||| |  ||||  ||| ||  |     | || | ||  |  |||| |   |  | |    |  ||           
GACTCGAACAATCTCAGGGATGCTTTGAAGTATTCGGCTCAGATGCTCTCCGAGCTCAGGACTTCCAAGCTTTCTCCTCACAAGTACTACGAACTATgtcagttcctttc----tcagatccaccgttatcttgttt--ttcgttggatcctgtaactgtttctgcaattacgattgttaatttgcgtctttctctcgctgaattcgttgtttcag

upper sequence: AT2G17790.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA01G36870.1 (Glycine max), 5'ss of exon 2
GACTCGAATAATCTGAAAGATGCTCTCAAGTATTCGGCTCAGATGCTAAGCGAGTTACGGACTTCGAAGCTATCACCTCACAAGTACTATGATCTATgtgagttgtttccgtcttctgatctaccttgatcatatttatttcgctcaatcccttaattgacttaatag----ggtt--ttgtttgtgatctgatttgatggtttttag--------
|||||||| ||||| |  || ||| | ||||||||||||||||||||   |||| |  ||||||| ||||| || |||||||||||||| || ||||||    |||| |  ||| | |||| | | | | | | |||  | || |  ||||  ||| ||  |   ||     | ||  |  |||| |   |  | |    |  ||           
GACTCGAACAATCTCAGGGACGCTTTGAAGTATTCGGCTCAGATGCTCTCCGAGCTCAGGACTTCCAAGCTTTCGCCTCACAAGTACTACGAACTATgt---ctgttcctctct-cagatccatcgttaccttgttt--tccgttggatcctctaactgtttctgtattcgcgattgttaatttgcgtctttctctcgctgaattcgttgtttcag