Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGAGCCATTTCGGGAGCTGTTTTCTCTATCGAGGTCTTTGAATCATCTCTGGATCTCTGGAAATCCGATGAGTCGGGTTTCGGATGTTTTCTCTACTTGgtgagcaacattacttgctctgttttttaagtagctatgaagtttggaatgtggtgattagtgtttcttttgtgaattttttgtgtag

Basic information

species Arabidopsis thaliana
transcript AT2G17730.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G17730.2 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv00s0264g00020.t01 (Vitis vinifera), 5'ss of exon 2
TGGAGCCATTTCGGGAGCTGTTTTCTCTATCGAGGTCTTTGAATCATCTCTGGATCTCTGGAAATCCGATGAGTCGGGTTTCGGATGTTTTCTCTACTTGgtgagcaacattacttgctctgttttttaagtagctatgaagtttggaatgtggtgattagtgtttcttttgtgaattttttgtgtag-----------------
|||||| || || ||||||||||||||||| |||||||||||||| ||||| | ||||||| |||| |||||||| ||  | |||||| | |||||| ||||||||||      |||   | ||     | |    ||    |||    |  || ||| |||   |   || || | | |  |||                    
TGGAGCAATATCAGGAGCTGTTTTCTCTATTGAGGTCTTTGAATCTTCTCTTGTTCTCTGGCAATCTGATGAGTCAGGGATTGGATGTCTGCTCTACCTGgtgagcaat-----ttggcttcttgccccattgatcatatgctttaatgttaggggataagttggtgaattatggactctgggtgggaaaaggaagagaaatata
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86056628|gb|DR352385.1|DR352385
EST:     TGGATCTCTGGAAATCCGATGAGTCGGGTTTCGGATGTTTTCTCTACTTG                         ATTGATGTCATTGTTAGTCTTCTAAGCGGGAGACTTGTACGAGAGCGCATT
genomic: TGGATCTCTGGAAATCCGATGAGTCGGGTTTCGGATGTTTTCTCTACTTGgtgagcaaca ... ttttgtgtagATTGATGTCATTGTTAGTCTTCTAAGCGGGAGACTTGTACGAGAGCGCATT
EST: gi|86056626|gb|DR352383.1|DR352383
EST:     TGGATCTCTGGAAATCCGATGAGTCGGGTTTCGGATGTTTTCTCTACTTG                         ATTGATGTCATTGTTAGTCTTCTAAGCGGGAGACTTGTACGAGAGCGCATT
genomic: TGGATCTCTGGAAATCCGATGAGTCGGGTTTCGGATGTTTTCTCTACTTGgtgagcaaca ... ttttgtgtagATTGATGTCATTGTTAGTCTTCTAAGCGGGAGACTTGTACGAGAGCGCATT
EST: gi|86056631|gb|DR352388.1|DR352388
EST:     TGGATCTCTGGAAATCCGATGAGTCGGGTTTCGGATGTTTTCTCTACTTG                         ATTGATGTCATTGTTAGTCTTCTAAGCGGGAGACTTGTACGAGAGCGCATT
genomic: TGGATCTCTGGAAATCCGATGAGTCGGGTTTCGGATGTTTTCTCTACTTGgtgagcaaca ... ttttgtgtagATTGATGTCATTGTTAGTCTTCTAAGCGGGAGACTTGTACGAGAGCGCATT
EST: gi|86056625|gb|DR352382.1|DR352382
EST:     TGGATCTCTGGAAATCCGATGAGTCGGGTTTCGGATGTTTTCTCTACTTG                         ATTGATGTCATTGTTAGTCTTCTAAGCGGGAGACTTGTACGAGAGCGCATT
genomic: TGGATCTCTGGAAATCCGATGAGTCGGGTTTCGGATGTTTTCTCTACTTGgtgagcaaca ... ttttgtgtagATTGATGTCATTGTTAGTCTTCTAAGCGGGAGACTTGTACGAGAGCGCATT
EST: gi|86056624|gb|DR352381.1|DR352381
EST:     TGGATCTCTGGAAATCCGATGAGTCGGGTTTCGGATGTTTTCTCTACTTG                         ATTGATGTCATTGTTAGTCTTCTAAGCGGGAGACTTGTACGAGAGCGCATT
genomic: TGGATCTCTGGAAATCCGATGAGTCGGGTTTCGGATGTTTTCTCTACTTGgtgagcaaca ... ttttgtgtagATTGATGTCATTGTTAGTCTTCTAAGCGGGAGACTTGTACGAGAGCGCATT
EST: gi|86056632|gb|DR352389.1|DR352389
EST:     TGGATCTCTGGAAATCCGATGAGTCGGGTTTCGGATGTTTTCTCTACTTG                         ATTGATGTCATTGTTAGTCTTCTAAGCGGGAGACTTGTACGAGAGCGCATT
genomic: TGGATCTCTGGAAATCCGATGAGTCGGGTTTCGGATGTTTTCTCTACTTGgtgagcaaca ... ttttgtgtagATTGATGTCATTGTTAGTCTTCTAAGCGGGAGACTTGTACGAGAGCGCATT
EST: gi|124970265|gb|EL044106.1|EL044106
EST:     TCGGGTTTCGGATGTTTTCTCTACTTG                         ATTGATGTCATTGTTAGTCTTCTAAGCGGGAGACTTGTACGAGAGCGCATT
genomic: TCGGGTTTCGGATGTTTTCTCTACTTGgtgagcaaca ... ttttgtgtagATTGATGTCATTGTTAGTCTTCTAAGCGGGAGACTTGTACGAGAGCGCATT
EST: gi|125306399|gb|EL320484.1|EL320484
EST:     TGTTTTCTCTACTTG                         ATTGATGTCATTGTTAGTCTTCTAAGCGGGAGACTTGTACGAGAGCGCATT
genomic: TGTTTTCTCTACTTGgtgagcaaca ... ttttgtgtagATTGATGTCATTGTTAGTCTTCTAAGCGGGAGACTTGTACGAGAGCGCATT
EST: gi|86056627|gb|DR352384.1|DR352384
EST:     TGGATCTCTGGAAATCCGATGAGTCGGGTTTCGGATGTTTTCTCTACTTG                         ATTGATGTCATTGTTAGTCTTCTAAGCGGGAGACTTGTACGAGAGCGCATT
genomic: TGGATCTCTGGAAATCCGATGAGTCGGGTTTCGGATGTTTTCTCTACTTGgtgagcaaca ... ttttgtgtagATTGATGTCATTGTTAGTCTTCTAAGCGGGAGACTTGTACGAGAGCGCATT
EST: gi|86056622|gb|DR352379.1|DR352379
EST:     TGGATCTCTGGAAATCCGATGAGTCGGGTTTCGGATGTTTTCTCTACTTG                         ATTGATGTCATTGTTAGTCTTCTAAGCGGGAGACTTGTACGAGAGCGCATT
genomic: TGGATCTCTGGAAATCCGATGAGTCGGGTTTCGGATGTTTTCTCTACTTGgtgagcaaca ... ttttgtgtagATTGATGTCATTGTTAGTCTTCTAAGCGGGAGACTTGTACGAGAGCGCATT
EST: gi|86056630|gb|DR352387.1|DR352387
EST:     TGGATCTCTGGAAATCCGATGAGTCGGGTTTCGGATGTTTTCTCTACTTG                         ATTGATGTCATTGTTAGTCTTCTAAGCGGGAGACTTGTACGAGAGCGCATT
genomic: TGGATCTCTGGAAATCCGATGAGTCGGGTTTCGGATGTTTTCTCTACTTGgtgagcaaca ... ttttgtgtagATTGATGTCATTGTTAGTCTTCTAAGCGGGAGACTTGTACGAGAGCGCATT