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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTTTAGTAATTTTCCGATGGCTTCAAGCTCAGAGAAAACACCTCTTATTCCTTCAGgtatatatgttaatctcgattttagttttagaatcgatttggttgttgtttcttcgagtaatatagagaaattgttttcaacag

Basic information

species Arabidopsis thaliana
transcript AT2G17390.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86055531|gb|DR351288.1|DR351288
EST:     TAATTTTCCGATGGCTTCAAGCTCAGAGAAAACACCTCTTATTCCTTCAG                         ATGAGAAAAACGATACCAAGGAAGAGAGTAAGAGTACTACTAAACCAGAAT
genomic: TAATTTTCCGATGGCTTCAAGCTCAGAGAAAACACCTCTTATTCCTTCAGgtatatatgt ... ttttcaacagATGAGAAAAACGATACCAAGGAAGAGAGTAAGAGTACTACTAAACCAGAAT
EST: gi|125019546|gb|EL091815.1|EL091815
EST:     TAATTTTCCGATGGCTTCAAGCTCAGAGAAAACACCTCTTATTCCTTCAG                         ATGAGAAAAACGATACCAAGGAAGAGAGTAAGAGTACTACTAAACCAGAAT
genomic: TAATTTTCCGATGGCTTCAAGCTCAGAGAAAACACCTCTTATTCCTTCAGgtatatatgt ... ttttcaacagATGAGAAAAACGATACCAAGGAAGAGAGTAAGAGTACTACTAAACCAGAAT
EST: gi|86055530|gb|DR351287.1|DR351287
EST:     TAATTTTCCGATGGCTTCAAGCTCAGAGAAAACACCTCTTATTCCTTCAG                         ATGAGAAAAACGATACCAAGGAAGAGAGTAAGAGTACTACTAAACCAGAAT
genomic: TAATTTTCCGATGGCTTCAAGCTCAGAGAAAACACCTCTTATTCCTTCAGgtatatatgt ... ttttcaacagATGAGAAAAACGATACCAAGGAAGAGAGTAAGAGTACTACTAAACCAGAAT
EST: gi|86055524|gb|DR351281.1|DR351281
EST:     TAATTTTCCGATGGCTTCAAGCTCAGAGAAAACACCTCTTATTCCTTCAG                         ATGAGAAAAACGATACCAAGGAAGAGAGTAAGAGTACTACTAAACCAGAAT
genomic: TAATTTTCCGATGGCTTCAAGCTCAGAGAAAACACCTCTTATTCCTTCAGgtatatatgt ... ttttcaacagATGAGAAAAACGATACCAAGGAAGAGAGTAAGAGTACTACTAAACCAGAAT
EST: gi|116476826|gb|EG519418.1|EG519418
EST:     TAATTTTCCGATGGCTTCAAGCTCAGAGAAAACACCTCTTATTCCTTCAG                         ATGAGAAAAACGATACCAAGGAAGAGAGTAAGAGTACTACTAAACCAGAAT
genomic: TAATTTTCCGATGGCTTCAAGCTCAGAGAAAACACCTCTTATTCCTTCAGgtatatatgt ... ttttcaacagATGAGAAAAACGATACCAAGGAAGAGAGTAAGAGTACTACTAAACCAGAAT
EST: gi|86055526|gb|DR351283.1|DR351283
EST:     TAATTTTCCGATGGCTTCAAGCTCAGAGAAAACACCTCTTATTCCTTCAG                         ATGAGAAAAACGATACCAAGGAAGAGAGTAAGAGTACTACTAAACCAGAAT
genomic: TAATTTTCCGATGGCTTCAAGCTCAGAGAAAACACCTCTTATTCCTTCAGgtatatatgt ... ttttcaacagATGAGAAAAACGATACCAAGGAAGAGAGTAAGAGTACTACTAAACCAGAAT
EST: gi|125298925|gb|EL313010.1|EL313010
EST:     TAATTTTCCGATGGCTTCAAGCTCAGAGAAAACACCTCTTATTCCTTCAG                         ATGAGAAAAACGATACCAAGGAAGAGAGTAAGAGTACTACTAAACCAGAAT
genomic: TAATTTTCCGATGGCTTCAAGCTCAGAGAAAACACCTCTTATTCCTTCAGgtatatatgt ... ttttcaacagATGAGAAAAACGATACCAAGGAAGAGAGTAAGAGTACTACTAAACCAGAAT
EST: gi|86055536|gb|DR351293.1|DR351293
EST:     TAATTTTCCGATGGCTTCAAGCTCAGAGAAAACACCTCTTATTCCTTCAG                         ATGAGAAAAACGATACCAAGGAAGAGAGTAAGAGTACTACTAAACCAGAAT
genomic: TAATTTTCCGATGGCTTCAAGCTCAGAGAAAACACCTCTTATTCCTTCAGgtatatatgt ... ttttcaacagATGAGAAAAACGATACCAAGGAAGAGAGTAAGAGTACTACTAAACCAGAAT
EST: gi|86055528|gb|DR351285.1|DR351285
EST:     TAATTTTCCGATGGCTTCAAGCTCAGAGAAAACACCTCTTATTCCTTCAG                         ATGAGAAAAACGATACCAAGGAAGAGAGTAAGAGTACTACTAAACCAGAAT
genomic: TAATTTTCCGATGGCTTCAAGCTCAGAGAAAACACCTCTTATTCCTTCAGgtatatatgt ... ttttcaacagATGAGAAAAACGATACCAAGGAAGAGAGTAAGAGTACTACTAAACCAGAAT
EST: gi|86055533|gb|DR351290.1|DR351290
EST:     TAATTTTCCGATGGCTTCAAGCTCAGAGAAAACACCTCTTATTCCTTCAG                         ATGAGAAAAACGATACCAAGGAAGAGAGTAAGAGTACTACTAAACCAGAAT
genomic: TAATTTTCCGATGGCTTCAAGCTCAGAGAAAACACCTCTTATTCCTTCAGgtatatatgt ... ttttcaacagATGAGAAAAACGATACCAAGGAAGAGAGTAAGAGTACTACTAAACCAGAAT
EST: gi|86055525|gb|DR351282.1|DR351282
EST:     TAATTTTCCGATGGCTTCAAGCTCAGAGAAAACACCTCTTATTCCTTCAG                         ATGAGAAAAKACGATACCAAGGAAGAGAGTAAGAGGTACTACTAAACCAGA
genomic: TAATTTTCCGATGGCTTCAAGCTCAGAGAAAACACCTCTTATTCCTTCAGgtatatatgt ... ttttcaacagATGAGAAAA-ACGATACCAAGGAAGAGAGTAAGAG-TACTACTAAACCAGA
EST: gi|86055527|gb|DR351284.1|DR351284
EST:     TAATTTTCCGATGGCTTCAAGCTCAGAGAAAACACCTCTTATTCCTTCAG                         ATGAGAAAAACGATACCAAGGAAGAAAGTAAGAGTACTACTACTAAACCAG
genomic: TAATTTTCCGATGGCTTCAAGCTCAGAGAAAACACCTCTTATTCCTTCAGgtatatatgt ... ttttcaacagATGAGAAAAACGATACCAAGGAAGAGAGTAAGAG---TACTACTAAACCAG
EST: gi|86055532|gb|DR351289.1|DR351289
EST:     TAATTTKCSGATGGCTTCAAGCTCAGAGAAAACACCTCTTATTCCTTCAG                         ATGAGAAAAACGATACCAAGGAAGAGAGTAAGAGTACTACTAAACCAGAAT
genomic: TAATTTTCCGATGGCTTCAAGCTCAGAGAAAACACCTCTTATTCCTTCAGgtatatatgt ... ttttcaacagATGAGAAAAACGATACCAAGGAAGAGAGTAAGAGTACTACTAAACCAGAAT
EST: gi|86055534|gb|DR351291.1|DR351291
EST:     TAATTTTCCGATGGCTTCAAGCTCAGAGAAAACACCTCTTATTCCTTCAG                         ATGAGAAAAACGATACCAAGGAAGAGAGTAAGAGTACTACTAAACCAGAAT
genomic: TAATTTTCCGATGGCTTCAAGCTCAGAGAAAACACCTCTTATTCCTTCAGgtatatatgt ... ttttcaacagATGAGAAAAACGATACCAAGGAAGAGAGTAAGAGTACTACTAAACCAGAAT
EST: gi|86055523|gb|DR351280.1|DR351280
EST:     TAATTTTCCGATGGCTTCAAGCTCAGAGAAAACACCTCTTATTCCTTCAG                         ATGAGAAAAACGATACCAAGGAAGAGAGTAAGAGTACTACTAAACCAGAAT
genomic: TAATTTTCCGATGGCTTCAAGCTCAGAGAAAACACCTCTTATTCCTTCAGgtatatatgt ... ttttcaacagATGAGAAAAACGATACCAAGGAAGAGAGTAAGAGTACTACTAAACCAGAAT
EST: gi|116419184|gb|EG461776.1|EG461776
EST:     TAATTTTCCGATGGCTTCAAGCTCAGAGAAAACACCTCTTATTCCTTCAG                         ATGAGAAAAACGATACCAAGGAAGAGAGTAAGAGTACTACTAAACCAGAAT
genomic: TAATTTTCCGATGGCTTCAAGCTCAGAGAAAACACCTCTTATTCCTTCAGgtatatatgt ... ttttcaacagATGAGAAAAACGATACCAAGGAAGAGAGTAAGAGTACTACTAAACCAGAAT
EST: gi|86055535|gb|DR351292.1|DR351292
EST:     TAATTTTCCGATGGCTTCAAGCTCAGAGAAAACACCTCTTATTCCTTCAG                         ATGAGAAAAACGATACCAAGGAAGAGAGTAAGAGTACTACTAAACCAGAAT
genomic: TAATTTTCCGATGGCTTCAAGCTCAGAGAAAACACCTCTTATTCCTTCAGgtatatatgt ... ttttcaacagATGAGAAAAACGATACCAAGGAAGAGAGTAAGAGTACTACTAAACCAGAAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGTTTTAGTAATTTTCCGATGGCTTCAAGCTCAGAGAAAACACCTCTTATTCCTTCAGgtatatatgttaatctcgattttagttttagaatcgatttggttgttgtttcttcgagtaatatagagaaattgttttcaacag

- - - - - - - - - - - -  CAAGCT
- - - - - - - - - - - - -  AGCTCA