Sequence
atgc intronic sequence ATGC exonic sequenceTACTATTATGTGTTAGGTGTGGGACAAACGGAGCGTAAGTTTTGGTTCTTCACTCCTCCTGAGATCGGTCCTGATGTTCCCTACACTTTTGGTCTCATTGgtactgtcctgaaacatattgtcatggttttaacttttaacaaaaatgcattttactagcctctcccatggacttgatcttgtgttgcaaatttttgttttgcag
Basic information
species | Arabidopsis thaliana |
transcript | AT2G16430.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT2G16430.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA09G36360.1 (Glycine max), 5'ss of exon 3
TACTATTATGTGTTAGGTGTGGGACAAACGGAGCGTAAGTTTTGGTTCTTCACTCCTCCTGAGATCGGTCCTGATGTTCCCTACACTTTTGGTCTCATTGgtactgtcctgaaacatattgtcatggttttaacttttaacaaaaatgcattttactagcctctcccatggacttgatcttgtgttgcaaatttttgtttt-gcag--
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TACTACTATGAGGTTGGACTTGGGAACACAACACGGCAATTTTGGTTTGTGACTCCTCCTGAAATTGGTCCTGATGTGCCATACACATTTGGTCTCATAGgtaa-gtgtattaatattctatcaaagt---aacttggggttgctatg---ttagctgttatttgatacaagcatattcatgt-tgataagttgtcataaaagtaggt
upper sequence: AT2G16430.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA12G01000.1 (Glycine max), 5'ss of exon 3
TACTATTATGTGTTAGGTGTGGGACAAACGGAGCGTAAGTTTTGGTTCTTCACTCCTCCTGAGATCGGTCCTGATGTTCCCTACACTTTTGGTCTCATTGgtac-tgtcctgaaacatattgtcatggttttaacttttaacaaaaatgcattttactagcctctccca---tggac--ttgatcttgtgttgcaaatttttgttttgcag------------------------------------------------------------------
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TACTACTATGAGGTTGGACTTGGGAACACAACACGGCAGTTTTGGTTTGTGACTCCTCCTGAAATCGGTCCCGATGTGCCATATACATTTGGTCTCATAGgtaagtgtact--attctatcaaagtaattcggagtcactgagggggtctagctcaattgtctttatcaccttgaattgttgagcattcatcattaatttgggaaggaaaaatgctatatgtttgtgtaccaataggccattatgtttcctgtaaactggtttgtctttatttgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|124799208|gb|EH888887.1|EH888887EST: TTTTGGTCTCATTG GGGATCTTGGGCAGAGTTATGACTCAAACATAACCTTAACACATTATGAGA
genomic: TTTTGGTCTCATTGgtactgtcct ... tgttttgcagGGGATCTTGGGCAGAGTTATGACTCAAACATAACCTTAACACATTATGAGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TACTATTATGTGTTAGGTGTGGGACAAACGGAGCGTAAGTTTTGGTTCTTCACTCCTCCTGAGATCGGTCCTGATGTTCCCTACACTTTTGGTCTCATTGgtactgtcctgaaacatattgtcatggttttaacttttaacaaaaatgcattttactagcctctcccatggacttgatcttgtgttgcaaatttttgttttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC