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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTTGAATGTTGAAGTGTTTGAGAGACCTTGTCCTGAGCCTAACATTCAACCTTGGGACATTCCTTATGTTCACTATCCTAAACCTAAGACCTATAGCAGgtaaatgagagttgtttctttgtgtgtcttcaattttggttcttggttcttatgcttatgtgttgtgggttggaatttggtttag

Basic information

species Arabidopsis thaliana
transcript AT2G15730.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G15730.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA02G15180.1 (Glycine max), 5'ss of exon 2
TCTTGAATGTTGAAGTGTTTGAGAGACCTTGTCCTGAGCCTAACATTCAACCTTGGGACATTCCTTATGTTCACTATCCTAAACCTAAGACCTATAGCAGgtaaatgagagttgtttctttgtgtgtcttcaattttggttct-tggttcttatgcttatgtgttgtgggttgga--atttggtttag---------
|  |  || |  | ||  || | |  || ||||| || ||||| ||| |||||||||| ||||||||||| ||||| ||||| || || || || ||||||| ||       | |     ||  |   || ||  ||  || |   |    | |    || |  | |   |||    ||||||| |           
TTCTAGATATCAAGGTTGTTCAAAAGCCATGTCCAGAACCTAATATTGAACCTTGGGAGATTCCTTATGTGCACTACCCTAACCCCAAAACTTACAGCAGgtgaaattataatatactgctgcttaaatttaaggttatttttgcagaatctgtttgaattttatttatattgcttcatttggtatgtctttgttag