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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTTTATGGAGATTCAAGCTAGCATGATTGAACTCACTGGGAAGCTCAAACAGgtgaatcctcactttctttgtatttatcaagttttagaatcaaacgtgacacattgtataagggtttacttgtaatttgttagttcttgaactgtgtttg...

Basic information

species Arabidopsis thaliana
transcript AT2G07340.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86036312|gb|DR332065.1|DR332065
EST:     TTATGGAGATTCAAGCTAGCATGATTGAACTCACTGGGAAGCTCAAACAG                         GTGCAGAATCAGATGCGCAACAAAGAGGGAGATAGAAAGCGAGCTTTCTTA
genomic: TTATGGAGATTCAAGCTAGCATGATTGAACTCACTGGGAAGCTCAAACAGgtgaatcctc ... ttatatatagGTGCAGAATCAGATGCGCAACAAAGAGGGAGATAGAAAGCGAGCTTTCTTA
EST: gi|86079502|gb|DR375259.1|DR375259
EST:     TTATGGAGATTCAAGCTAGCATGATTGAACTCACTGGGAAGCTCAAACAG                         GTGCAGAATCAGATGCGCAACAAAGAGGGAGATAGAAAGCGAGCTTTCTTA
genomic: TTATGGAGATTCAAGCTAGCATGATTGAACTCACTGGGAAGCTCAAACAGgtgaatcctc ... ttatatatagGTGCAGAATCAGATGCGCAACAAAGAGGGAGATAGAAAGCGAGCTTTCTTA
EST: gi|163992040|gb|ES000987.1|ES000987
EST:     TTATGGAGATTCAAGCTAGCATGATTGAACTCACTGGGAAGCTCAAACAG                         GTGCAGAATCAGATGCGCAACAAA
genomic: TTATGGAGATTCAAGCTAGCATGATTGAACTCACTGGGAAGCTCAAACAGgtgaatcctc ... ttatatatagGTGCAGAATCAGATGCGCAACAAA
EST: gi|86036311|gb|DR332064.1|DR332064
EST:     TTATGGAGATTCAAGCTAGCATGATTGAACTCACTGGGAAGCTCAAACAG                         GTGCAGAATCAGATGCGCAACAAAGAGGGAGATAGAAAGCGAGCTTTCTTA
genomic: TTATGGAGATTCAAGCTAGCATGATTGAACTCACTGGGAAGCTCAAACAGgtgaatcctc ... ttatatatagGTGCAGAATCAGATGCGCAACAAAGAGGGAGATAGAAAGCGAGCTTTCTTA
EST: gi|86036314|gb|DR332067.1|DR332067
EST:     TTATGGAGATTCAAGCTAGCATGATTGAACTCACTGGGAAGCTCAAACAG                         GTGCAGAATCAGATGCGCAACAAAGAGGGAGATAGAAAGCGAGCTTTCTTA
genomic: TTATGGAGATTCAAGCTAGCATGATTGAACTCACTGGGAAGCTCAAACAGgtgaatcctc ... ttatatatagGTGCAGAATCAGATGCGCAACAAAGAGGGAGATAGAAAGCGAGCTTTCTTA
EST: gi|86036302|gb|DR332055.1|DR332055
EST:     TTATGGAGATTCAAGCTAGCATGATTGAACTCACTGGGAAGCTCAAACAG                         GTGCAGAATCAGATGCGCAACAAAGAGGGAGATAGAAAGCGAGCTTTCTTA
genomic: TTATGGAGATTCAAGCTAGCATGATTGAACTCACTGGGAAGCTCAAACAGgtgaatcctc ... ttatatatagGTGCAGAATCAGATGCGCAACAAAGAGGGAGATAGAAAGCGAGCTTTCTTA
EST: gi|86036303|gb|DR332056.1|DR332056
EST:     TTATGGAGATTCAAGCTAGCATGATTGAACTCACTGGGAAGCTCAAACAG                         GTGCAGAATCAGATGCGCAACAAAGAGGGAGATAGAAAGCGAGCTTTCTTA
genomic: TTATGGAGATTCAAGCTAGCATGATTGAACTCACTGGGAAGCTCAAACAGgtgaatcctc ... ttatatatagGTGCAGAATCAGATGCGCAACAAAGAGGGAGATAGAAAGCGAGCTTTCTTA
EST: gi|86036310|gb|DR332063.1|DR332063
EST:     TTATGGAGATTCAAGCTAGCATGATTGAACTCACTGGGAAGCTCAAACAG                         GTGCAGAATCAGATGCGCAACAAAGAGGGAGATAGAAAGCGAGCTTTCTTA
genomic: TTATGGAGATTCAAGCTAGCATGATTGAACTCACTGGGAAGCTCAAACAGgtgaatcctc ... ttatatatagGTGCAGAATCAGATGCGCAACAAAGAGGGAGATAGAAAGCGAGCTTTCTTA
EST: gi|86036301|gb|DR332054.1|DR332054
EST:     TTATGGAGATTCAAGCTAGCATGATTGAACTCACTGGGAAGCTCAAACAG                         GTGCAGAATCAGATGCGCAACAAAGAGGGAGATAGAAAGCGAGCTTTCTTA
genomic: TTATGGAGATTCAAGCTAGCATGATTGAACTCACTGGGAAGCTCAAACAGgtgaatcctc ... ttatatatagGTGCAGAATCAGATGCGCAACAAAGAGGGAGATAGAAAGCGAGCTTTCTTA
EST: gi|86036305|gb|DR332058.1|DR332058
EST:     TTATGGAGATTCAAGCTAGCATGATTGAACTCACTGGGAAGCTCAAACAG                         GTGCAGAATCAGATGCGCAACAAAGAGGGAGATAGAAAGCGAGCTTTCTTA
genomic: TTATGGAGATTCAAGCTAGCATGATTGAACTCACTGGGAAGCTCAAACAGgtgaatcctc ... ttatatatagGTGCAGAATCAGATGCGCAACAAAGAGGGAGATAGAAAGCGAGCTTTCTTA
EST: gi|86036306|gb|DR332059.1|DR332059
EST:     TTATGGAGATTCAAGCTAGCATGATTGAACTCACTGGGAAGCTCAAACAG                         GTGCAGAATCAGATGCGCAACAAAGAGGGAGATAGAAAGCGAGCTTTCTTA
genomic: TTATGGAGATTCAAGCTAGCATGATTGAACTCACTGGGAAGCTCAAACAGgtgaatcctc ... ttatatatagGTGCAGAATCAGATGCGCAACAAAGAGGGAGATAGAAAGCGAGCTTTCTTA
EST: gi|86036307|gb|DR332060.1|DR332060
EST:     TTATGGAGATTCAAGCTAGCATGATTGAACTCACTGGGAAGCTCAAACAG                         GTGCAGAATCAGATGCGCAACAAAGAGGGAGATAGAAAGCGAGCTTTCTTA
genomic: TTATGGAGATTCAAGCTAGCATGATTGAACTCACTGGGAAGCTCAAACAGgtgaatcctc ... ttatatatagGTGCAGAATCAGATGCGCAACAAAGAGGGAGATAGAAAGCGAGCTTTCTTA
EST: gi|86036309|gb|DR332062.1|DR332062
EST:     TTATGGAGATTCAAGCTAGCATGATTGAACTCACTGGGAAGCTCAAACAG                         GTGCAGAATCAGATGCGCAACAAAGAGGGAGATAGAAAGCGAGCTTTCTTA
genomic: TTATGGAGATTCAAGCTAGCATGATTGAACTCACTGGGAAGCTCAAACAGgtgaatcctc ... ttatatatagGTGCAGAATCAGATGCGCAACAAAGAGGGAGATAGAAAGCGAGCTTTCTTA
EST: gi|124843567|gb|EH928004.1|EH928004
EST:     TTATGGAGATTCAAGCTAGCATGATTGAACTCACTGGGAAGCTCAAACAG                         GTGCAGAATCAGAT
genomic: TTATGGAGATTCAAGCTAGCATGATTGAACTCACTGGGAAGCTCAAACAGgtgaatcctc ... ttatatatagGTGCAGAATCAGAT
EST: gi|86036308|gb|DR332061.1|DR332061
EST:     TTATGGAGATTCAAGCTAGCATGATTGAACTCACTGGGAAGCTCAAACAG                         GTGCAGAATCAGATGCGCAACAAAGAGGGAGATAGAAAGCGAGCTTTCTTA
genomic: TTATGGAGATTCAAGCTAGCATGATTGAACTCACTGGGAAGCTCAAACAGgtgaatcctc ... ttatatatagGTGCAGAATCAGATGCGCAACAAAGAGGGAGATAGAAAGCGAGCTTTCTTA
EST: gi|86036313|gb|DR332066.1|DR332066
EST:     TTATGGAGATTCAAGCTAGCATGATTGAACTCACTGGGAAGCTCAAACAG                         GTGCAGAATCAGATGCGCAACAAAGAGGGAGATAGAAAGCGAGCTTTCTTA
genomic: TTATGGAGATTCAAGCTAGCATGATTGAACTCACTGGGAAGCTCAAACAGgtgaatcctc ... ttatatatagGTGCAGAATCAGATGCGCAACAAAGAGGGAGATAGAAAGCGAGCTTTCTTA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCTTTTATGGAGATTCAAGCTAGCATGATTGAACTCACTGGGAAGCTCAAACAGgtgaatcctcactttctttgtatttatcaagttttagaatcaaacgtgacacattgtataagggtttacttgtaatttgttagttcttgaactgtgtttg

- - -  TGGAGA
- - - - GGAGAT
- - - - - - -  CAAGCT
- - - - - - - - - - - - - - - - - - - - -  AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctcacttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaatcaaa