Sequence
atgc intronic sequence ATGC exonic sequenceCACGTTAAAGAGGGGTCTAGATTTCTATTCAACTATACAGGCACACGACGGGCACTGGCCAGGTGATTATGGTGGTCCTATGTTTCTTCTCCCAGGACTGgtcagttcatatgtttcgtgcctaagctttcttttgcaaattttacggaaaacttgacaaaaactacttttgattacag
Basic information
species | Arabidopsis thaliana |
transcript | AT2G07050.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT2G07050.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GRMZM2G023798_T01 (Zea mays), 5'ss of exon 2
CACGTTAAAGAGGGGTCTAGATTTCTATTCAACTATACAGGCACACGACGGGCACTGGCCAGGTGATTATGGTGGTCCTATGTTTCTTCTCCCAGGACTGgtcagttcatatgtttcgtgcctaagctttcttttgcaaattttacggaaaacttgacaaaaactacttttgattacag---------------------
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TACATTGAAAAGGGCAATCAGCCGTTTCTCTACTCTCCAGGCACATGATGGACACTGGCCTGGGGATTATGGTGGTCCTATGTTCCTTATGCCAGGCTTGgtgcctctttcaactcttcttctatagtgatatgtttaacttgcttacttcacttggatatgcattcctacgactaaatctgtgctctgtgattaatctt
upper sequence: AT2G07050.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv11s0065g00640.t01 (Vitis vinifera), 5'ss of exon 3
CACGTTAAAGAGGGGTCTAGATTTCTATTCAACTATACAGGCACACGACGGGCACTGGCCAGGTGATTATGGTGGTCCTATGTTTCTTCTCCCAGGACTGgtcagttcatatgtttcgtgcctaagctttcttttgcaaattttacggaaaacttgacaaaa-actacttttgattacag-------------------------
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CACATTAAGAAGGGCTATCAATTTTCATTCAACTCTCCAGGCTCATGATGGACACTGGCCAGGGGATTATGGAGGTCCCATGTTTCTTTTGCCCGGCTTGgtaagtgctcat----cttgcagtgacacttctttacat-tttggaaggcattttgacatgtcacaagtttttatggggagtgaaatgcatttgaaccgtaattaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|47831404|gb|CK121088.1|CK121088EST: GGCACTGGCCAGGTGATTATGGTGGTCCTATGTTTCTTCTCCCAGGACTG ATAATTACACTCTCCATAACTGGAGCACTGAATACAGTATTGTCGGAACAA
genomic: GGCACTGGCCAGGTGATTATGGTGGTCCTATGTTTCTTCTCCCAGGACTGgtcagttcat ... ttgattacagATAATTACACTCTCCATAACTGGAGCACTGAATACAGTATTGTCGGAACAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CACGTTAAAGAGGGGTCTAGATTTCTATTCAACTATACAGGCACACGACGGGCACTGGCCAGGTGATTATGGTGGTCCTATGTTTCTTCTCCCAGGACTGgtcagttcatatgtttcgtgcctaagctttcttttgcaaattttacggaaaacttgacaaaaactacttttgattacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG