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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGTTCCAACTTGTAAGAGACCCTTTTCTTTTTCCACAAGGGCAATGTCTGAATCCAGTGAAAACAAGGCTCCTTCAGGGCTTCCAATTGATTTGAGAGgttggttggcatatctttctttgaattcagagaagacttggtgctatctgaactaagcaagtgtaaatggtacag

Basic information

species Arabidopsis thaliana
transcript AT2G05990.2
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|47831556|gb|CK121240.1|CK121240
EST:     TGAATCCAGTGAAAACAAGGCTCCTTCAGGGCTTCCAATTGATTTGAGAG                         GGAAAAGAGCTTTCATTGCTGGTATAGCTGATGATAATGGCTATGGTTGGG
genomic: TGAATCCAGTGAAAACAAGGCTCCTTCAGGGCTTCCAATTGATTTGAGAGgttggttggc ... aatggtacagGGAAAAGAGCTTTCATTGCTGGTATAGCTGATGATAATGGCTATGGTTGGG
EST: gi|125110940|gb|EL162658.1|EL162658
EST:     TGAATCCAGTGAAAACAAGGCTCCTTCAGGGCTTCCAATTGATTTGAGAG                         GGAAAAGAGCTTTCATTG
genomic: TGAATCCAGTGAAAACAAGGCTCCTTCAGGGCTTCCAATTGATTTGAGAGgttggttggc ... aatggtacagGGAAAAGAGCTTTCATTG
EST: gi|124999253|gb|EL071522.1|EL071522
EST:     GGGCTTCCAATTGATTTGAGAG                         GGAAAAGAGCTTTCATTGCTGGTATAGCTGATGATAATGGCTATGG
genomic: GGGCTTCCAATTGATTTGAGAGgttggttggc ... aatggtacagGGAAAAGAGCTTTCATTGCTGGTATAGCTGATGATAATGGCTATGG