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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGACTACACACTGACAAACCTGTTAGCTGCAGTTATCATAGCGTTTACACTAGGCGAAATAAGTCCAAGCAGACCAAATTTCACCACACAGCTTTCTCAAgtcagttacacatacattcatacacatatttgttgttggtttttgaaatgcaaagtttttttgtcacag

Basic information

species Arabidopsis thaliana
transcript AT2G03600.4
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116437781|gb|EG480373.1|EG480373
EST:     TAGGCGAAATAAGTCCAAGCAGACCAAATTTCACCACACAGCTTTCTCAA                         GATAATTGGCCGTCTGTGATGTTTGCAATGGCTGGAGGAATGTTTCTTAGC
genomic: TAGGCGAAATAAGTCCAAGCAGACCAAATTTCACCACACAGCTTTCTCAAgtcagttaca ... tttgtcacagGATAATTGGCCGTCTGTGATGTTTGCAATGGCTGGAGGAATATTTCTTAGC
EST: gi|116437675|gb|EG480267.1|EG480267
EST:     ATTTCACCACACAGCTTTCTCAA                         GATAATTGGCCGTCTGTGATGTTTGCAATGGCTGGAGGAATATTTCTTACC
genomic: ATTTCACCACACAGCTTTCTCAAgtcagttaca ... tttgtcacagGATAATTGGCCGTCTGTGATGTTTGCAATGGCTGGAGGAATATTTCTTAGC