Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTCGTTGTGAGAGTAAATCCAAATTTGAATGTTATTCTCACAGCATGTATCACTGTTTATGTGGGTTGCTTTCGTTCGGTCAAGGATACTCCTCCAACGgtaagacaaagacgcaatcagattgtttttttttattagtgaaacaattttccaaattcgatctaaattgtttctttggtttgaaatggtgtag

Basic information

species Arabidopsis thaliana
transcript AT2G03120.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164105950|gb|ES164723.1|ES164723
EST:     TCACTGTTTATGTGGGTTGCTTTCGTTCGGTCAAGGATACTCCTCCAACG                         GAGACGATGTCAAAAGA
genomic: TCACTGTTTATGTGGGTTGCTTTCGTTCGGTCAAGGATACTCCTCCAACGgtaagacaaa ... aatggtgtagGAGACGATGTCAAAAGA
EST: gi|116442939|gb|EG485531.1|EG485531
EST:     TCACTGTTTATGTGGGTTGCTTTCGTTCGGTCAAGGATACTCCTCCAACG                         GAGACGATGTCAAAAGAACATGCCATGCGTTTCCCACTGGTTGGGAGTGCT
genomic: TCACTGTTTATGTGGGTTGCTTTCGTTCGGTCAAGGATACTCCTCCAACGgtaagacaaa ... aatggtgtagGAGACGATGTCAAAAGAACATGCCATGCGTTTCCCATTGGTTGGGAGTGCT
EST: gi|86050554|gb|DR346309.1|DR346309
EST:     TCACTGTTTATGTGGGTTGCTTTCGTTCGGTCAAGGATACTCCTCCAACG                         GAGACGATGTCAAAAGAACATGCCATGCGTTTCCCATTGGTTGGGAGTGCT
genomic: TCACTGTTTATGTGGGTTGCTTTCGTTCGGTCAAGGATACTCCTCCAACGgtaagacaaa ... aatggtgtagGAGACGATGTCAAAAGAACATGCCATGCGTTTCCCATTGGTTGGGAGTGCT
EST: gi|86050556|gb|DR346311.1|DR346311
EST:     TCACTGTTTATGTGGGTTGCTTTCGTTCGCTCAAGGATACTCCTCCAACG                         GAGACGATGTCAAAAGAACATGCCATGCGTTTCCCATTGGTTGGGAGTGCT
genomic: TCACTGTTTATGTGGGTTGCTTTCGTTCGGTCAAGGATACTCCTCCAACGgtaagacaaa ... aatggtgtagGAGACGATGTCAAAAGAACATGCCATGCGTTTCCCATTGGTTGGGAGTGCT
EST: gi|125301056|gb|EL315141.1|EL315141
EST:     TTTATGTGGGTTGCTTTCGTTCGGTCAAGGATACTCCTCCAACG                         GAGACGATGTCAAAAAGAACATGCCATGCGTTTCCCNTTGGTTGGGAGTGC
genomic: TTTATGTGGGTTGCTTTCGTTCGGTCAAGGATACTCCTCCAACGgtaagacaaa ... aatggtgtagGAGACGATGTCAAAA-GAACATGCCATGCGTTTCCCATTGGTTGGGAGTGC
EST: gi|86050548|gb|DR346303.1|DR346303
EST:     TCACTGTTTATGTGGGTTGCTTTCGTTCGGTCAAGGATACTCCTCCAACG                         GAGACGATGTCAAAAGAACATGCCATGCGTTTCCCATTGGTTGGGAGTGCT
genomic: TCACTGTTTATGTGGGTTGCTTTCGTTCGGTCAAGGATACTCCTCCAACGgtaagacaaa ... aatggtgtagGAGACGATGTCAAAAGAACATGCCATGCGTTTCCCATTGGTTGGGAGTGCT
EST: gi|86050557|gb|DR346312.1|DR346312
EST:     TCACTGTTTATGTGGGTTGCTTTCGTTCGGTCAAGGATACTCCTCCAACG                         GAGACGATGTCAAAAGAACATGCCATGCGTTTCCCATTGGTTGGGAGTGCT
genomic: TCACTGTTTATGTGGGTTGCTTTCGTTCGGTCAAGGATACTCCTCCAACGgtaagacaaa ... aatggtgtagGAGACGATGTCAAAAGAACATGCCATGCGTTTCCCATTGGTTGGGAGTGCT
EST: gi|86050552|gb|DR346307.1|DR346307
EST:     TCACTGTTTATGTGGGTTGCTTTCGTTCGGTCAAGGATACTCCTCCAACG                         GAGACGATGTCAAAAGAACATGCCATGCGTTTCCCATTGGTTGGGAGTGCT
genomic: TCACTGTTTATGTGGGTTGCTTTCGTTCGGTCAAGGATACTCCTCCAACGgtaagacaaa ... aatggtgtagGAGACGATGTCAAAAGAACATGCCATGCGTTTCCCATTGGTTGGGAGTGCT
EST: gi|86050550|gb|DR346305.1|DR346305
EST:     TCACTGTTTATGTGGGTTGCTTTCGTTCGCTCAAGGATACTCCTCCAACG                         GAGACGATGTCAAAAGAACATGCCATGCGTTTCCCATTGGTTGGGAGTGCT
genomic: TCACTGTTTATGTGGGTTGCTTTCGTTCGGTCAAGGATACTCCTCCAACGgtaagacaaa ... aatggtgtagGAGACGATGTCAAAAGAACATGCCATGCGTTTCCCATTGGTTGGGAGTGCT
EST: gi|163983735|gb|ES148641.1|ES148641
EST:     CACTGTTTATGTGGGTTGCTTTCGTTCGGTCAAGGATACTCCTCCAAACG                         GAGACGATGTCAAAAGAAC
genomic: CACTGTTTATGTGGGTTGCTTTCGTTCGGTCAAGGATACTCCTCCAA-CGgtaagacaaa ... aatggtgtagGAGACGATGTCAAAAGAAC
EST: gi|86050551|gb|DR346306.1|DR346306
EST:     TCACTGTTTATGTGGGTTGCTTTCGTTCGGTCAAGGATACTCCTCCAACG                         GAGACGATGTCAAAAGAACATGCCATGCGTTTCCCATTGGTTGGGAGTGCT
genomic: TCACTGTTTATGTGGGTTGCTTTCGTTCGGTCAAGGATACTCCTCCAACGgtaagacaaa ... aatggtgtagGAGACGATGTCAAAAGAACATGCCATGCGTTTCCCATTGGTTGGGAGTGCT
EST: gi|86050547|gb|DR346302.1|DR346302
EST:     TCACTGTTTATGTGGGTTGCTTTCGTTCGGTCAAGGATACTCCTCCAACG                         GAGACGATGTCAAAAGAACATGCCATGCGTTTCCCATTGGTTGGGAGTGCT
genomic: TCACTGTTTATGTGGGTTGCTTTCGTTCGGTCAAGGATACTCCTCCAACGgtaagacaaa ... aatggtgtagGAGACGATGTCAAAAGAACATGCCATGCGTTTCCCATTGGTTGGGAGTGCT
EST: gi|86050549|gb|DR346304.1|DR346304
EST:     TCACTGTTTATGTGGGTTGCTTTCGTTCGGTCAAGGATACTCCTCCAACG                         GAGACGATGTCAAAAGAACATGCCATGCGTTTCCCATTGGTTGGGAGTGCT
genomic: TCACTGTTTATGTGGGTTGCTTTCGTTCGGTCAAGGATACTCCTCCAACGgtaagacaaa ... aatggtgtagGAGACGATGTCAAAAGAACATGCCATGCGTTTCCCATTGGTTGGGAGTGCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACTCGTTGTGAGAGTAAATCCAAATTTGAATGTTATTCTCACAGCATGTATCACTGTTTATGTGGGTTGCTTTCGTTCGGTCAAGGATACTCCTCCAACGgtaagacaaagacgcaatcagattgtttttttttattagtgaaacaattttccaaattcgatctaaattgtttctttggtttgaaatggtgtag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTCCTC