1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
TGGAGTCGTTGAAGACACGAGCCGTTAGCTTGGCCAAAGCCATTGCTCGAATCCTTGAAGATTTCGACGCTTATGGTCGAACCAACACTACTCCTAAATGgttcatcatcatcgaatccagaatttgataatattttgatgtttatgaattttttgtaacaaggattgattttctttttgttttgaacag
species | Arabidopsis thaliana |
transcript | AT2G03070.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ATCCTTGAAGATTTCGACGCTTATGGTCGAACCAACACTACTCCTAAATG GCAGGATATTCTAGGGCAGTATTCGATGGTAAATCTCGAGCTTTTTAACATEST: gi|19877005|gb|AU237836.1|AU237836
genomic: ATCCTTGAAGATTTCGACGCTTATGGTCGAACCAACACTACTCCTAAATGgttcatcatc ... ttttgaacagGCAGGATATTCTAGGGCAGTATTCGATGGTAAATCTCGAGCTTTTTAACAT
EST: ATCCTTGAAGATTTCGACGCTTATGGTCGAACCAACACTACTCCTAAATG GCAGGATATTCTAGGGCAGTATTCGATGGTAAATCTCGAGCTTTTTAACATEST: gi|116475757|gb|EG518349.1|EG518349
genomic: ATCCTTGAAGATTTCGACGCTTATGGTCGAACCAACACTACTCCTAAATGgttcatcatc ... ttttgaacagGCAGGATATTCTAGGGCAGTATTCGATGGTAAATCTCGAGCTTTTTAACAT
EST: ATCCTTGAAGATTTCGACGCTTATGGTCGAACCAACACTACTCCTAAATG GCAGGATATTCTAGGGCAGTATTCGATGGTAAATCTCGAGCTTTTTAACAT
genomic: ATCCTTGAAGATTTCGACGCTTATGGTCGAACCAACACTACTCCTAAATGgttcatcatc ... ttttgaacagGCAGGATATTCTAGGGCAGTATTCGATGGTAAATCTCGAGCTTTTTAACAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGAGTCGTTGAAGACACGAGCCGTTAGCTTGGCCAAAGCCATTGCTCGAATCCTTGAAGATTTCGACGCTTATGGTCGAACCAACACTACTCCTAAATGgttcatcatcatcgaatccagaatttgataatattttgatgtttatgaattttttgtaacaaggattgattttctttttgttttgaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA