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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTATATGCTTGGGTTGTTGCAAACTTTGCTCTCGGTTCACTTGGAGGTGATCCTCTTAAAACAACCGGAATTGTTGAACTTGGCGGGGCTTCTGCTCAGgtttagttgtttttttttccctttcagatttatgcttgagtcaaaagctatcctgcaacagacgatgagtgtttgtatgttcttttag

Basic information

species Arabidopsis thaliana
transcript AT2G02970.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G02970.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA01G05750.1 (Glycine max), 5'ss of exon 2
TGTATATGCTTGGGTTGTTGCAAACTTTGCTCTCGGTTCACTTGGAGGTGATCCTCTTAAAACAACCGGAATTGTTGAACTTGGCGGGGCTTCTGCTCAGgtttagttgtttttttttcccttt-cagattta---tgcttgagtcaaa--agctatcctgcaacagacgatgagtgtttgtatgttcttttag-------
 || ||||||||||||||||| || | ||| || |   | ||||||||||||||| |  ||||||| || ||| |||||||||| || ||||||||||||||  |  |   |  ||     | | ||  ||||   || | ||  ||||  |  ||| ||| || |    || | | ||||  ||    |  ||       
AGTGTATGCTTGGGTTGTTGCTAATTATGCACTTGACACTCTTGGAGGTGATCCTTTGGAAACAACTGGGATTATTGAACTTGGTGGTGCTTCTGCTCAGgtacaactacatagttgcagttatacaattttattttgttggatccaaattatttatactgtaaaattttat-attatttgactgcaaatgcagttactta

upper sequence: AT2G02970.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA02G11980.1 (Glycine max), 5'ss of exon 2
TGTATATGCTTGGGTTGTTGCAAACTTTGCTCTCGGTTCACTTGGAGGTGATCCTCTTAAAACAACCGGAATTGTTGAACTTGGCGGGGCTTCTGCTCAGgtttagttgtttttttttccctttcagatttatgcttgagtcaa---aagctatc-----ctgcaacagacgatgagtgtttg-tatgttcttttag-----------------------------------------------------------------------------------------------------
  | ||||||||||||||||| || | ||| || ||  | ||||||||||||||| |  |||| || || ||| |||||||||| || ||||||||||||||  |  |   |  ||     || || | || |  ||   || |   ||  |||      ||| || |   |||  |  ||   |    |   ||||                                                                                                     
AATGTATGCTTGGGTTGTTGCTAATTATGCACTTGGCACTCTTGGAGGTGATCCTTTGGAAACTACTGGGATTATTGAACTTGGTGGTGCTTCTGCTCAGgtacaacttcatagttgctgattacacaattttattttgttcgatccaaattattttacactgtaaaatttgatatgatttgactgcaattacttagtgagttttaaaggcaatgctttagaaaaaagctccacctttatgactaggttatttcatactgctgggaaacatgccaaatggatttctaccttgttttag

upper sequence: AT2G02970.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv01s0026g02490.t01 (Vitis vinifera), 5'ss of exon 2
TGTATATGCTTGGGTTGTTGCAAACTTTGCTCTCGGTTCACTTGGAGGTGATCCTCTTAAAACAACCGGAATTGTTGAACTTGGCGGGGCTTCTGCTCAGgtttagttgtttttttttccctttcagatttatgcttgagtcaaaagctatcctgcaacagacgatgagtgtttgtatgttcttttag------------------
  ||||||||||||||||||||||   ||| || ||    ||||||||||||||||   ||||||| || ||| |||| ||||| |||||||| ||||||     |||||||  |||||||| || | |  ||     ||     |   ||  |     | |   |||| |  | | | | || || |                  
AATATATGCTTGGGTTGTTGCAAATCATGCACTTGGCAGTCTTGGAGGTGATCCTCGGGAAACAACTGGGATTATTGAGCTTGGTGGGGCTTCGGCTCAG-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164146007|gb|ES196498.1|ES196498
EST:     ATCCTCTTAAAACAACCGGAATTGTTGAACTTGGCGGGGCTTCTGCTCAG                         GTGACATTTGTG
genomic: ATCCTCTTAAAACAACCGGAATTGTTGAACTTGGCGGGGCTTCTGCTCAGgtttagttgt ... gttcttttagGTGACATTTGTG