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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATGCTCATAGAAAATGTGTTCAGCGTTGGTGCAATGAAAAGGGAAACATTATATGCGAGATTTGTCACCAGgtatgttaccttttttgttgtaatctttaggattatagacttgaatcgatgtggcaatatgactatgcatatattcgatgatagatcacacatgatgaat...

Basic information

species Arabidopsis thaliana
transcript AT2G02960.5
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G02960.5 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA20G04870.1 (Glycine max), 5'ss of exon 2
TATGCTCATAGAAAATGTGTTCAGCGTTGGTGCAATGAAAAGGGAAACATTATATGCGAGATTTGTCACCAGgtatgttacctttt-------ttgttgtaatctttaggattatag--acttgaa--tcgatgtggcaatatgactatgcatat-attcgatgatagatcacacatgatgaat--------------------------------------------------------------------
|||||||||||||| || |||||||||||||||||||| || ||| |||| |  || ||||| |||||| ||||||| | | |||        || | | |     |   ||| | |  | |||||  | |   ||    | ||   |||   || |||| || ||     ||| ||| |   |                                                                    
TATGCTCATAGAAAGTGCGTTCAGCGTTGGTGCAATGAGAAAGGAGACATAACTTGTGAGATATGTCACAAGgtatgattcttttgtatgtgattttcgcatatagtgaaatttttgttatttgaaatttgtgatgatggtctggtcatggtaatgattcaattattctgtaca-atggtatctctggattgaaccaaatgctctgtgtgtgtgtactgaatttctttcaattttgtatatgtaattctcag

upper sequence: AT2G02960.5 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA07G35750.2 (Glycine max), 5'ss of exon 2
TATGCTCATAGAAAATGTGTTCAGCGTTGGTGCAATGAAAAGGGAAACATTATATGCGAGATTTGTCACCAGgtatgtt-------------accttttttgttgt--aatctttaggattatagacttgaatcgatg---------tggcaatatgactatgcat-atattcgatgatagatcacacatgatgaat--------------------------------------------------------------------
|||||||||||||| || |||||||||||||||||||| || ||| |||| || || ||||| |||||  ||||||| |             |  |||  | ||||  ||| | | | ||| || | |||    ||||         ||  ||||||   ||||||  | ||   |  ||      |    |  | |                                                                    
TATGCTCATAGAAAGTGCGTTCAGCGTTGGTGCAATGAGAAAGGAGACATAATTTGTGAGATATGTCATAAGgtatggttcttatacatgtgatttttacttttgtgaaatttatggtattttaaatttgtggtgatggttagataatgctaatatggtcatgcattgttttaactagtaagctttattgaacaattattttgttcaattgtgtgtctcagtggtgtgtactaaattctttcaattttatatatgtaattctcag