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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCCTTGGAATATCGCATGCTTTTTCTTCGTTTATTTGGCTGTGCGGCCCAATTACAGGCCTTGTGgtaggttaaaagtttctttaagaattttagcagttttactatcttgcacgtaatgatctcacgagagttcaagttttgatttatattggatcagaaactatttttctgccccattttgttcatacttatttgtttgttgggttttag

Basic information

species Arabidopsis thaliana
transcript AT2G02860.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G02860.2 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA18G15950.1 (Glycine max), 5'ss of exon 2
ACCCTTGGAATATCGCATGCTTTTTCTTCGTTTATTTGGCTGTGCGGCCCAATTACAGGCCTTGTGgtaggttaaaagtttctttaagaattttagcagttttactatcttgcacgtaatgatctcacgagagttcaagttttgatttatattggatcagaaactatttttctgccccattttgttcatacttatttgtttgttgggttttag
||  | ||||||   ||||| |||||||||||||||||||| || ||||| |||||||| |||||||||||||  |   ||| || |  || || | | ||| | | || |||   |      |||||         |||| | | |  |  || ||  |     |||||  ||| |||||                                
ACGTTGGGAATAGGACATGCGTTTTCTTCGTTTATTTGGCTCTGTGGCCCCATTACAGGTCTTGTGgtaggtttcactcttccttta--atctttg-aatttcatt-tcatgcttttg-----ctcac---------agttcttactgctgctgcattggt--tcattttagtgctccattgaacg---------------------------

upper sequence: AT2G02860.2 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA08G40980.1 (Glycine max), 5'ss of exon 2
ACCCTTGGAATATCGCATGCTTTTTCTTCGTTTATTTGGCTGTGCGGCCCAATTACAGGCCTTGTGgtaggttaaaagtttctttaagaattttagcagttttactatcttgcacgtaatgatctcacgagagttcaagttttgatttatattggatcagaaactatttttctgccccattttgttcatacttatttgtttgttgggttttag
||  | ||||||   ||||| |||||||||||||||||||| || ||||| |||||||| |||||||||||||  |   ||| || |   ||| |              || ||  | ||| | |  |     |   |||||| | |  |  || ||  |     ||||| |||| || ||   |                            
ACGTTGGGAATAGGACATGCGTTTTCTTCGTTTATTTGGCTCTGTGGCCCCATTACAGGTCTTGTGgtaggtttcactcttcctttaatgtttgaa-------------tttcatttcatgcttttgc-----tcagagtttttactgctcctgcattggt--tcattttactgctccgttgaatg---------------------------

upper sequence: AT2G02860.2 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv01s0026g01960.t01 (Vitis vinifera), 5'ss of exon 2
ACCCTTGGAATATCGCATGCTTTTTCTTCGTTTATTTGGCTGTGCGGCCCAATTACAGGCCTTGTGgtaggttaaaagtttctttaagaattttagcagttttactatcttgcacgtaatgatctcacgagagttcaagttttgatttatattggatcagaaactatttttctgccccattttgttcatacttatttgtttgttgggttttag
|| |||||||||  |||||| |||||||| ||||| ||||| || ||||| ||||||||||||||||||||| | ||               | | ||||||    | ||     | | ||  | ||  |    |  | ||||  |||| | |     |  |||| | | ||  |      |||                             
ACACTTGGAATAGAGCATGCCTTTTCTTCATTTATCTGGCTTTGTGGCCCTATTACAGGCCTTGTGgtaggtgataa---------------tgaccagtttcttcaactgttgtgaactg--cccagaattactacatttttattttacaatttcctaataact-tatatcatcaatgccttg-----------------------------