1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GTCCACGAAGAGATTTGGTCCAGATGAGAAGAGGTTCGAGCATCTTGCATTCTTGAACTTAGCTCAAAGTGTAGTCTGCTTGATCTGGTCTTATATAAgtgagcacttgtgcaattccatctctactttgttatcatcgaatacagactaatggagctgaaatgttgtatttgtctgtaatgtgataatgtccag
species | Arabidopsis thaliana |
transcript | AT2G02810.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ATTCTTGAACTTAGCTCAAAGTGTAGTCTGCTTGATCTGGTCTTATATAA TGATCAAGCTCTGGTCAAATGCTGGTAACGGTGGAGCACCATGGTGGACGTEST: gi|125271118|gb|EL285203.1|EL285203
genomic: ATTCTTGAACTTAGCTCAAAGTGTAGTCTGCTTGATCTGGTCTTATATAAgtgagcactt ... taatgtccagTGATCAAGCTCTGGTCAAATGCTGGTAACGGTGGAGCACCATGGTGGACGT
EST: TTCTTGAACTTAGCTCAAAGTGTAGTCTGCTTGATCTGGTCTTATATAA TGATCAAGCTCTGGTCAAATGCTGGTAACGGTGGAGCACCATGGTEST: gi|86041457|gb|DR337212.1|DR337212
genomic: TTCTTGAACTTAGCTCAAAGTGTAGTCTGCTTGATCTGGTCTTATATAAgtgagcactt ... taatgtccagTGATCAAGCTCTGGTCAAATGCTGGTAACGGTGGAGCACCATGGT
EST: ATTCTTGAACTTAGCTCAAAGTGTAGTCTGCTTGATCTGGTCTTATATAA TGATCAAGCTCTGGTCAAATGCTGGTAACGGTGGAGCACCATGGTGGACGT
genomic: ATTCTTGAACTTAGCTCAAAGTGTAGTCTGCTTGATCTGGTCTTATATAAgtgagcactt ... taatgtccagTGATCAAGCTCTGGTCAAATGCTGGTAACGGTGGAGCACCATGGTGGACGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCCACGAAGAGATTTGGTCCAGATGAGAAGAGGTTCGAGCATCTTGCATTCTTGAACTTAGCTCAAAGTGTAGTCTGCTTGATCTGGTCTTATATAAgtgagcacttgtgcaattccatctctactttgttatcatcgaatacagactaatggagctgaaatgttgtatttgtctgtaatgtgataatgtccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA