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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGAGATACAAAAGAAGTATGATAAGAGTGCAGTTTCCTGACGGAGTTGTGCTTCAAGGTGTGTTTGCTCCATGGGAACCTACTTTTGCTCTCTATGAGgttaacatctgaattctctttgggttttactcaatgaaggccaaagtttttgaaatttctgtggtttttgttttcttctcag

Basic information

species Arabidopsis thaliana
transcript AT2G01650.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G01650.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA08G04760.2 (Glycine max), 5'ss of exon 3
AAAGAGATACAAAAGAAGTATGATAAGAGTGCAGTTTCCTGACGGAGTTGTGCTTCAAGGTGTGTTTGCTCCATGGGAACCTACTTTTGCTCTCTATGAGgttaac--------atctgaattctctttgggttttactca---atgaaggccaaagtttt-----tgaaatttctgtggt-ttttgttttcttctcag-----
    ||||||| || || ||| || ||  | || ||||| || |||||||| ||||||||||| ||||||||||||||| | ||| |||||||||||||||||           |  ||| ||    || | |||| ||||    |   | ||||  ||||     |  |  |  |||||| ||||||  | | ||        
----AGATACACAAAAACTATTATCAGGATTCAATTTCCAGATGGAGTTGTACTTCAAGGTGTATTTGCTCCATGGGAAACAACTATTGCTCTCTATGAGGTTTgtccttttctacttgattttaagtttgatttttctcatgtttttggaccaagattttgtttgtccatctgatgtggtattttgtggtatactggagcaat

upper sequence: AT2G01650.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA08G04760.3 (Glycine max), 5'ss of exon 3
AAAGAGATACAAAAGAAGTATGATAAGAGTGCAGTTTCCTGACGGAGTTGTGCTTCAAGGTGTGTTTGCTCCATGGGAACCTACTTTTGCTCTCTATGAGgttaac--------atctgaattctctttgggttttactcaa---tgaaggccaaagtttt-----tgaaatttctgtggt-ttttgttttcttctcag-
 |||||||||| || || ||| || ||  | || ||||| || |||||||| ||||||||||| ||||||||||||||| | ||| |||||||||||||||||           |  ||| ||    || | |||| ||||    |   | ||||  ||||     |  |  |  |||||| ||||||  | | ||    
GAAGAGATACACAAAAACTATTATCAGGATTCAATTTCCAGATGGAGTTGTACTTCAAGGTGTATTTGCTCCATGGGAAACAACTATTGCTCTCTATGAGgtttgtccttttctacttgattttaagtttgatttttctcatgtttttggaccaagattttgtttgtccatctgatgtggtattttgtggtatactggag

upper sequence: AT2G01650.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA05G34970.1 (Glycine max), 5'ss of exon 2
AAAGAGATACAAAAGAAGTATGATAAGAGTGCAGTTTCCTGACGGAGTTGTGCTTCAAGGTGTGTTTGCTCCATGGGAACCTACTTTTGCTCTCTATGAGgttaacatctgaattctc--tttgggtt---ttactcaatgaaggccaaagt-ttttgaaatttctgtggtttttgttttcttctcag------------
 ||||||||||  | |  ||| || ||  | |||||||| || |||||||| ||||||||||| ||||||||||||||||| |||  |||| ||||  |||||      |   | ||   |||   ||   ||   ||    | |  |  || |||||   |||    |      | |  |||  ||             
GAAGAGATACACTAAAGCTATTATCAGGATTCAGTTTCCAGATGGAGTTGTACTTCAAGGTGTATTTGCTCCATGGGAACCAACTGCTGCTATCTACAAGgtttgtcctttgctacttgatttaaatttgtttgtccatctgatgatatggtattttgtggtttactggagcaaagctagctttacatctggttctaaat

upper sequence: AT2G01650.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv01s0011g05570.t01 (Vitis vinifera), 5'ss of exon 2
AAAGAGATACAAAAGAAGTATGATAAGAGTGCAGTTTCCTGACGGAGTTGTGCTTCAAGGTGTGTTTGCTCCATGGGAACCTACTTTTGCTCTCTATGAGgttaa-catctgaa----ttctctttgggttttactcaatgaaggccaaagtttttgaaatttctgtggtttttgttttcttctcag-------------
 | ||| |||| || || | | ||  | || ||||||||||| ||||||||||| |||||||| ||| |||| |||||||| ||   |||||||||||||||||  | ||| |     ||||  || | | ||   |       |    | |        ||| |||   | |  ||        |              
GAGGAGGTACACAAAAACTGTTATTCGGGTCCAGTTTCCTGATGGAGTTGTGCTCCAAGGTGTCTTTTCTCCTTGGGAACCAACCAGTGCTCTCTATGAGgttagtcctctcagccacttcttatttgatgttttcctcctcttgttccattcccacctgtttttgtcagtgtaattcagacactaaactgtcattaagt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124815999|gb|EH900865.1|EH900865
EST:     TGCTTCAAGGTGTGTTTGCTCCATGGGAACCTACTTTTGCTCTCTATGAG                         TTTGTGAGCTCTGCTTTGAAAGAACCAAGTTTGCAGTTTGAGCTT
genomic: TGCTTCAAGGTGTGTTTGCTCCATGGGAACCTACTTTTGCTCTCTATGAGgttaacatct ... ttcttctcagTTTGTGAGCTCTGCTTTGAAAGAACCAAGTTTGCAGTTTGAGCTT