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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTTGTCAAGTCTTGGATTTAGTCGCAACCTGAAGCCATCAAGATTTTCTTCTGGGATATCTTCATCTCTACAgttctgtgacaaattctgtaacatgtgtaaaagttattgatgtatgatgcacttttcgattctcagagtgtttgttttgtttatgtttaaatgtacag

Basic information

species Arabidopsis thaliana
transcript AT1G79530.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86039045|gb|DR334800.1|DR334800
EST:     CGCAACCTGAAGCCATCAAGATTTTCTTCTGGGATATCTTCATCTCTACA                         AAATGGCAATGCAAGAAG
genomic: CGCAACCTGAAGCCATCAAGATTTTCTTCTGGGATATCTTCATCTCTACAgttctgtgac ... aaatgtacagAAATGGCAATGCAAGAAG
EST: gi|124829581|gb|EH914172.1|EH914172
EST:     CTGGGATATCTTCATCTCTACA                         AAATGGCAATGCAAGAAGTGTGCAACCCATCAAGGCCACGGCTACAGAAGT
genomic: CTGGGATATCTTCATCTCTACAgttctgtgac ... aaatgtacagAAATGGCAATGCAAGAAGTGTGCAACCCATCAAGGCCACGGCTACAGAAGT
EST: gi|86039046|gb|DR334801.1|DR334801
EST:     CGCAACCTGAAGCCATCAAGATTTTCTTCTGGGATATCTTCATCTCTACA                         AAATGGCAATGCAAGAAGTGTGCAACCCATCAAGGCCACGGCTACAGAAGT
genomic: CGCAACCTGAAGCCATCAAGATTTTCTTCTGGGATATCTTCATCTCTACAgttctgtgac ... aaatgtacagAAATGGCAATGCAAGAAGTGTGCAACCCATCAAGGCCACGGCTACAGAAGT
EST: gi|86039047|gb|DR334802.1|DR334802
EST:     CGCAACCTGAAGCCATCAAGATTTTCTTCTGGGATATCTTCATCTCTACA                         AAATGGCAATGCAAGAAGTGTGCAACCCATCAAGGCCACGGCTACAGAAGT
genomic: CGCAACCTGAAGCCATCAAGATTTTCTTCTGGGATATCTTCATCTCTACAgttctgtgac ... aaatgtacagAAATGGCAATGCAAGAAGTGTGCAACCCATCAAGGCCACGGCTACAGAAGT
EST: gi|86039050|gb|DR334805.1|DR334805
EST:     CGCAACCTGAAGCCATCAAGATTTTCTTCTGGGATATCTTCATCTCTACA                         AAATGGCAATGCAAGAAGTGTGCAACCCATCAAGGCCACGGCTACAGAAGT
genomic: CGCAACCTGAAGCCATCAAGATTTTCTTCTGGGATATCTTCATCTCTACAgttctgtgac ... aaatgtacagAAATGGCAATGCAAGAAGTGTGCAACCCATCAAGGCCACGGCTACAGAAGT
EST: gi|86039044|gb|DR334799.1|DR334799
EST:     CGCAACCTGAAGCCATCAAGATTTTCTTCTGGGATATCTTCATCTCTACA                         AAATGGCAATGCAAGAAGTGTGCAACCCATCAAGGCCACGGCTACAGAAGT
genomic: CGCAACCTGAAGCCATCAAGATTTTCTTCTGGGATATCTTCATCTCTACAgttctgtgac ... aaatgtacagAAATGGCAATGCAAGAAGTGTGCAACCCATCAAGGCCACGGCTACAGAAGT
EST: gi|86039051|gb|DR334806.1|DR334806
EST:     CGCAACCTGAAGCCATCAAGATTTTCTTCTGGGATATCTTCATCTCTACA                         AAATGGCAATGCAAGAAGTGTGCAACCCATCAAGGCCACGGCTACAGAAGY
genomic: CGCAACCTGAAGCCATCAAGATTTTCTTCTGGGATATCTTCATCTCTACAgttctgtgac ... aaatgtacagAAATGGCAATGCAAGAAGTGTGCAACCCATCAAGGCCACGGCTACAGAAGT
EST: gi|86039048|gb|DR334803.1|DR334803
EST:     CGCAACCTGAAGCCATCAAGATTTTCTTCTGGGATATCTTCATCTCTACA                         AAATGGCAATGCAAGAAGTGTGCAACCCATCAAGGCCACGGCTACAGAAGT
genomic: CGCAACCTGAAGCCATCAAGATTTTCTTCTGGGATATCTTCATCTCTACAgttctgtgac ... aaatgtacagAAATGGCAATGCAAGAAGTGTGCAACCCATCAAGGCCACGGCTACAGAAGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTGTTGTCAAGTCTTGGATTTAGTCGCAACCTGAAGCCATCAAGATTTTCTTCTGGGATATCTTCATCTCTACAgttctgtgacaaattctgtaacatgtgtaaaagttattgatgtatgatgcacttttcgattctcagagtgtttgttttgtttatgtttaaatgtacag

- - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - -  TGAAGC