1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
AAGACACTTCAGGAAGAGAAAGGGAATGGCGAGATCCTTGTGGATCCTGTTGATGTGCTCCCTGTCAAGACTTTAGATGGAAAACTTCACTATCGAACAGgtgagaaatgagaagactcttgtgttttttgtttaatggctcgagttgagtagcattctaagtggaggtttttctgttttgtggctactggttcag
species | Arabidopsis thaliana |
transcript | AT1G79150.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TGATGTGCTCCCTGTCAAGACTTTAGATGGAAAACTTCACTATCGAACAG AGTCAAAGAAGTCAAAACTAGCTGAAGCCGATACAGAEST: gi|164052345|gb|ES045027.1|ES045027
genomic: TGATGTGCTCCCTGTCAAGACTTTAGATGGAAAACTTCACTATCGAACAGgtgagaaatg ... actggttcagAGTCAAAGAAGTCAAAACTAGCTGAAGCCGAAACAGA
EST: TGATGTGCTCCCTGTCAAGACTTTAGATGGAAAACTTCACTATCGAACAG AAAGTCAAAGAAGTCAAAACEST: gi|164066650|gb|ES100529.1|ES100529
genomic: TGATGTGCTCCCTGTCAAGACTTTAGATGGAAAACTTCACTATCGAACAGgtgagaaatg ... actggttcagA--GTCAAAGAAGTCAAAAC
EST: TGATGTGCTCCCTGTCAAGACTTTAGATGGAAAACTTCACTATCGAACAG AGTCAAAGAAGTCAAAACTAGCTGAAGCCGA
genomic: TGATGTGCTCCCTGTCAAGACTTTAGATGGAAAACTTCACTATCGAACAGgtgagaaatg ... actggttcagAGTCAAAGAAGTCAAAACTAGCTGAAGCCGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGACACTTCAGGAAGAGAAAGGGAATGGCGAGATCCTTGTGGATCCTGTTGATGTGCTCCCTGTCAAGACTTTAGATGGAAAACTTCACTATCGAACAGgtgagaaatgagaagactcttgtgttttttgtttaatggctcgagttgagtagcattctaagtggaggtttttctgttttgtggctactggttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA