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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATGATGATGGATGAAGATGTTGAGCAGGCCAGTTTGATGTCTTTCAATGACAGGCCTAGGGCTTTTCCCAACATGCGTAGTAAAACCTATAGTCCACTGgtacaacttttattcctctctttcttgagtgcttttctttttgcttgcatcagatcactgagatgcgtattataactagtttccttctatttcgtttagcatcttagtttcttgagcatctcgttttcattttctttgaaattgtataaagtttagttgttttttggcag

Basic information

species Arabidopsis thaliana
transcript AT1G78920.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116443901|gb|EG486493.1|EG486493
EST:     ACAGGCCTAGGGCTTTTCCCAACATGCGTAGTAAAACCTATAGTCCACTG                         ATATTCCGGATTATTAGGAAATTAAATGTCCGTGTCCTTTCGATAATTCTG
genomic: ACAGGCCTAGGGCTTTTCCCAACATGCGTAGTAAAACCTATAGTCCACTGgtacaacttt ... tttttggcagATATTCCGGATTATTAGGAAATTAAATGTCCGTGTCCTTTCGATAATTCTG
EST: gi|86081630|gb|DR377387.1|DR377387
EST:     ACAGGCCTAGGGCTTTTCCCAACATGCGTAGTAAAACCTATAGTCCACTG                         ATATTCCGGATTATTAGGAAATTAAATGTCCGTGTCCTTTCGATAATTCTG
genomic: ACAGGCCTAGGGCTTTTCCCAACATGCGTAGTAAAACCTATAGTCCACTGgtacaacttt ... tttttggcagATATTCCGGATTATTAGGAAATTAAATGTCCGTGTCCTTTCGATAATTCTG
EST: gi|124823456|gb|EH908322.1|EH908322
EST:     ACAGGCCTAGGGCTTTTCCCAACATGCGTAGTAAAACCTATAGTCCACTG                         ATATTCCGGATTATTAGGAAATTAAATGTCCGTGTCCTTTCGATAAATTCT
genomic: ACAGGCCTAGGGCTTTTCCCAACATGCGTAGTAAAACCTATAGTCCACTGgtacaacttt ... tttttggcagATATTCCGGATTATTAGGAAATTAAATGTCCGTGTCCTTTCGATAA-TTCT