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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTGTTTTGCTGCCATTATCGTTCTTTGTTTAGATGAGCTTCTTCAGAAAGGTTATGGCCTCGGTTCTGGTATTTCCCTTTTCATTGCTACTAATATCTGgtgagttttaagtactccaacgtctagctttctcggttaaaccgttatgcgcatttcagatgttaatggagtttcttttcttag

Basic information

species Arabidopsis thaliana
transcript AT1G78720.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G78720.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: LOC_Os03g11440.1 (Oryza sativa), 5'ss of exon 3
TCTGTTTTGCTGCCATTATCGTTCTTTGTTTAGATGAGCTTCTTCAGAAAGGTTATGGCCTCGGTTCTGGTATTTCCCTTTTCATTGCTACTAATATCTGgtgagttttaagtactccaacgtctagctttctcggttaaaccgttatgcgcatttcagatgttaatggagtttcttttcttag
| |  ||||||| ||| || ||  | ||| | ||||| ||||| ||||||||||||||  | |||||||| ||||| || || |||||||| |||||||||||||      | |||     ||    || | | | | | |   || |   ||  |    |  ||  | | | | | |   |||
TTTTCTTTGCTGGCATCATTGTCATCTGTCTGGATGAACTTCTCCAGAAAGGTTATGGTTTGGGTTCTGGCATTTCTCTCTTTATTGCTACCAATATCTGgtgagcacattgaacttt---gttcttctctattgttgacatt-ttctattcaacttgact--tatggaaatctttctctgtag

upper sequence: AT1G78720.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: LOC_Os09g17830.1 (Oryza sativa), 5'ss of exon 2
TCTGTTTTGCTGCCATTATCGTTCTTTGTTTAGATGAGCTTCTTCAGAAAGGTTATGGCCTCGGTTCTGGTATTTCCCTTTTCATTGCTACTAATATCTGgtgagt---tttaagtactccaacgtctagctttctcggttaaaccgttatgcgcatttcagatgttaatggagtttcttttcttag
| |  ||||||| ||| || ||| | ||  | ||||| ||||| |||||||| |||||  | |||||||| ||||| || ||||||||||| |||||||||| ||    || || | ||  | | |  |   ||   | |   ||  ||     || || ||                         
TTTTCTTTGCTGGCATCATTGTTATCTGCCTTGATGAACTTCTCCAGAAAGGCTATGGTTTGGGTTCTGGCATTTCTCTGTTCATTGCTACCAATATCTGgtaagcatcttaaatttctttatcttacattcttactgatgtgacattttgttacaatttag-------------------------

upper sequence: AT1G78720.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GRMZM2G130987_T02 (Zea mays), 5'ss of exon 3
TCTGTTTTGCTGCCATTATCGTTCTTTGTTTAGATGAGCTTCTTCAGAAAGGTTATGGCCTCGGTTCTGGTATTTCCCTTTTCATTGCTACTAATATCTGgtgagt--------tttaagtactcca---acgtctagctttctcggttaaaccgttatgcgcatttcagatgt-taatggagtttcttttct-tag
| |  ||||||| ||| || ||  | ||||| ||||| ||||| ||||||||||||||  | || ||||||||||| || ||||||||||| |||||||||| ||         |||||    |  |   | ||  |  ||     | |  |  ||| ||  |   | ||   | ||||     | ||||  | |||
TTTTCTTTGCTGGCATCATTGTCATCTGTTTGGATGAACTTCTCCAGAAAGGTTATGGTTTGGGATCTGGTATTTCTCTGTTCATTGCTACCAATATCTGgtaagcatgttggatttaatccttttattgatgttgatattagattgatgtaatgttctgttccacttagtcttataataagactgctttcatgtag

upper sequence: AT1G78720.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GRMZM2G073498_T02 (Zea mays), 5'ss of exon 2
TCTGTTTTGCTGCCATTATCGTTCTTTGTTTAGATGAGCTTCTTCAGAAAGGTTATGGCCTCGGTTCTGGTATTTCCCTTTTCATTGCTACTAATATCTGgtgagttttaagtactccaacgtctagctttctcggttaaaccgttatgcgcatttcagatgttaatggagtttcttttcttag
| |  ||||||| ||| || ||  | ||| | ||||| ||||| ||||||||||||||| | || ||||| ||||| || ||||||||||| |||||||||| ||  |   | |||  | | | |   ||  |  | |   | |||   |  |   |  ||  |||  || ||  ||    |||
TTTTCTTTGCTGGCATCATTGTCATCTGTCTGGATGAACTTCTCCAGAAAGGTTATGGCTTGGGATCTGGCATTTCTCTGTTCATTGCTACCAATATCTGgtaagcatcttggacttaatcctttta-ttgatgtgctgttctgttgcacttaaagcttataataa--gaattctttcatgtag