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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGTTGTCCTTACTTTGTCTATGCCAGATAACCCAATTGTCTGGATTATTTTCACTGGAAAATGCTTTGTTGGCATTTATTATCACAATGCAGTgtttttattttcttcttctttttggcagtgtttcattttcttactacttgtcacacttctctttgattcaatttatattgtctccatttgttggtgaatataagattagtaattgatacgttattacaatctcttgatcataggaacatgccgaacatctttccatcctatatgtgcaag

Basic information

species Arabidopsis thaliana
transcript AT1G77800.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G77800.2 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: LOC_Os02g52960.1 (Oryza sativa), 5'ss of exon 2
TCGTTGTCCTTACTTTGTCTATGCCAGATAACCCAATTGTCTGGATTATTTTCACTGGAAAATGCTTTGTTGGCATTTATTATCACAATGCAG-Tgtttttattttcttcttctttttggcagtgtttcattttcttactacttgtcacacttctctttgattcaatttatattgtctccatttgttggtgaatataagattagtaattgatacgttattacaatctcttgatcataggaacatgccgaacatctttccatcctatatgtgcaag
                |   |||||  | | ||   |  ||     | |   |    |   | || |     | |  |||    | |||   | | |  | || |        ||| |    ||||||    ||     || ||     |  || || |  ||||| || | |  | ||||| |                                                                                           
----------------GAACATGCCGAACA-CCTTTTCATCCTATATGTGCACGAGAGTCCAAGCATCAAATGGAGATATGGGGAAAATTTGGGTATCCTAATgtgagatcattttcttcaggtgtttgccattagccttattt-----aggtcgctgttgttcaacttgtttgttttccatgtag-----------------------------------------------------------------------------------------