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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCAATTACAAACCATTGCTACCGATTTTCAGAGAATATCTAAGATCCACGATCATCTCTTCATCGGACTTTCCGGTCTCGCCACCGATGTCCAGACATTgtaagctctcgtatatgtttactcctttcctcagagaattttaggtgaattacaaaatttagggctccgtttttttttgttttgtctttggtactgaag

Basic information

species Arabidopsis thaliana
transcript AT1G77440.2
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86076869|gb|DR372626.1|DR372626
EST:     GATCATCTCTTCATC-GACTTTCCGGTCTCGCCACCGATGTCCAGACATT                         GTACCAGCGACTCGTATTTCGTCATAAGTTATATCAGCTTAGGGAAGAAAG
genomic: GATCATCTCTTCATCGGACTTTCCGGTCTCGCCACCGATGTCCAGACATTgtaagctctc ... ggtactgaagGTACCAGCGACTCGTATTTCGTCATAAGTTATATCAGCTTAGGGAAGAAAG
EST: gi|124910680|gb|EH984760.1|EH984760
EST:     GATCATCTCTTCATCGGACTTTCCGGTCTCGCCACCGATGTCCAGACATT                         GTACCAGCGACTCGTATTTCGTCATAAGTT
genomic: GATCATCTCTTCATCGGACTTTCCGGTCTCGCCACCGATGTCCAGACATTgtaagctctc ... ggtactgaagGTACCAGCGACTCGTATTTCGTCATAAGTT
EST: gi|116388094|gb|EG430686.1|EG430686
EST:     GATCATCTCTTCATCGGACTTTCCGGTCTCGCCACCGATGTCCAGACATT                         GTACCAGCGACTCGTATTTCGTCATAAGTTATATCAGCTTAGGGAAGAAAG
genomic: GATCATCTCTTCATCGGACTTTCCGGTCTCGCCACCGATGTCCAGACATTgtaagctctc ... ggtactgaagGTACCAGCGACTCGTATTTCGTCATAAGTTATATCAGCTTAGGGAAGAAAG
EST: gi|124759998|gb|EH850128.1|EH850128
EST:     GATCATCTCTTCATCGGACTTTCCGGTCTCGCCACCGATGTCCAGACATT                         GTACCAGCGACTCGTATTTCG
genomic: GATCATCTCTTCATCGGACTTTCCGGTCTCGCCACCGATGTCCAGACATTgtaagctctc ... ggtactgaagGTACCAGCGACTCGTATTTCG