Sequence
atgc intronic sequence ATGC exonic sequenceATGCGGCTGCATGTGCAGAAAGGGCTACAAATGATATGCTGATTGGTCCAGATTGGGCTATTAACATTGAATTGTGTGATCTTATCAACATGGATCCTAGgtatttgtaatcagaaaactctcagatcgctttgctagttttcagttttctttgtggctgggaatgattagtttgagattgtttgagtcctttag
Basic information
species | Arabidopsis thaliana |
transcript | AT1G76970.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT1G76970.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA13G09390.1 (Glycine max), 5'ss of exon 1
ATGCGGCTGCATGTGCAGAAAGGGCTACAAATGATATGCTGATTGGTCCAGATTGGGCTATTAACATTGAATTGTGTGATCTTATCAACATGGATCCTAGgtatttgtaatcagaaaactctcagatcgctttgctagttttcagttttctttgtggctgggaatgattagtttgagat--tgtttgagtcctttag---------
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ATGCAGCAGCCTGTGCTGAGAGAGCAACTAGTGACATGCTGATTGGTCCAGACTGGGCAATTAACATAGAGTTGTGTGATATAATTAATATGGACCCTAGgtatctttctttg------ttttgccttattcctgtaatccatttatttatctattaatctgttctattggtttcaggatatgctttatttatctattaagaaatg
upper sequence: AT1G76970.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA06G12570.1 (Glycine max), 5'ss of exon 2
ATGCGGCTGCATGTGCAGAAAGGGCTACAAATGATATGCTGATTGGTCCAGATTGGGCTATTAACATTGAATTGTGTGATCTTATCAACATGGATCCTAGgtatttgtaatcagaaaactctcagatcgctttgct-agttttcagttttctttgtggctgggaatgattagtttgagattgtttgagtcctttag----------
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ACGCAGCTGCTTGTGCTGAGAGAGCAACTAGTGATATGCTCATTGGTCCAGACTGGGCAATCAACATAGACTTGTGTGATATCATTAATATGGACCCTGGgtatt-gttctcgt----ctctcgctttgtttctcttaatcactaatcgctgcggaaatctctagcgctttgcttg-gagagtcagtggtctgctgtatgaataca
upper sequence: AT1G76970.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv18s0001g01180.t01 (Vitis vinifera), 5'ss of exon 1
ATGCGGCTGCATGTGCAGAAAGGGCTACAAATGATATGCTGATTGGTCCAGATTGGGCTATTAACATTGAATTGTGTGATCTTATCAACATGGATCCTAGgtatttgtaatcagaaaactctcagatcgctttgctagttttcagttttctttgtggctgggaatgattagtttgagattgtttgagtcctttag----------
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ATGCAGCAGCATGTGTTGAAAGGGCAACGAGTGATATGTTGATTGGTCCAGACTGGGCAATAAACATCGAGCTATGTGATATCATTAACATGGATCCTGGgtatc-atacttttg---ctttaccagctattttttatttatttatttt-taaatagtgcgggttaaatagttgggaattcctttaaatattagttttgttagtaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86072282|gb|DR368039.1|DR368039EST: GATTGGGCTATTAACATTGAATTGTGTGATCTTATCAACATGGATCCTAG TCAAGCAAAAGAAGCTGTGAAGGTGCTCAAGAAGCGGTTAGGAAGTAAAAA
genomic: GATTGGGCTATTAACATTGAATTGTGTGATCTTATCAACATGGATCCTAGgtatttgtaa ... agtcctttagTCAAGCAAAAGAAGCTGTGAAGGTGCTCAAGAAGCGGTTAGGAAGTAAAAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATGCGGCTGCATGTGCAGAAAGGGCTACAAATGATATGCTGATTGGTCCAGATTGGGCTATTAACATTGAATTGTGTGATCTTATCAACATGGATCCTAGgtatttgtaatcagaaaactctcagatcgctttgctagttttcagttttctttgtggctgggaatgattagtttgagattgtttgagtcctttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA