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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATTCGATGGCTATGCTCATCTCTCTTCTGGGCTAGCTTGTGGTCTTGCTGGTCTCTCTGCTGGTATGGCTATTGGAATCGTCGGTGATGCTGGTGTTAGgtaattgctatctctgctacatgatcttaactgtttgattgcagcaattttgatcgattttcacttgtttagaagtttctgagatagctttgttgtttgt...

Basic information

species Arabidopsis thaliana
transcript AT1G75630.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G75630.2 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: LOC_Os11g06890.1 (Oryza sativa), 5'ss of exon 2
TATTCGATGGCTATGCTCATCTCTCTTCTGGGCTAGCTTGTGGTCTTGCTGGTCTCTCTGCTGGTATGGCTATTGGAATCGTCGGTGATGCTGGTGTTAGgtaattgctatctctgctacat-gatcttaactgtttgattgcagcaattttgatcgattttcacttgtttagaagtttctgag-atagctttgttgtttgt---
| || || ||||| || ||||| || || ||||| || ||||| || || |||||| |||| || ||||| || || |||||||||||||||||||| ||||||      |  |||||   | |||||    |||    ||   |    | || |    || |   |||  |   ||   | || || | ||| |  |       
TCTTTGACGGCTACGCGCATCTGTCGTCCGGGCTCGCCTGTGGCCTCGCCGGTCTCGCTGCCGGAATGGCCATCGGCATCGTCGGTGATGCTGGTGTCAGgtaaagatgctgcctgctttgttgatctgtgatgt--agttagtgtgtatatgctg---ttactgctgtgcattggtgattaagtatggttttatgatggaagct

upper sequence: AT1G75630.2 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GRMZM2G028432_T01 (Zea mays), 5'ss of exon 1
TATTCGATGGCTATGCTCATCTCTCTTCTGGGCTAGCTTGTGGTCTTGCTGGTCTCTCTGCTGGTATGGCTATTGGAATCGTCGGTGATGCTGGTGTTAGgtaa--ttgctatctct-gctacatgatcttaactgtttgattgcagcaattttgatcgattttcacttgtttagaagtttctg-agatagctttgttgtttgt
| || || |||||||| || || || || || || || |||||||||||||| ||  |||| || ||||| ||||| ||||| |||||||||||||| ||||||    |||  ||||    | ||  |  ||  || ||   |   ||   |   || | |  ||| |     || |||    | ||  |  | |     |   
TCTTTGACGGCTATGCCCACCTGTCGTCCGGCCTTGCCTGTGGTCTTGCTGGGCTTGCTGCAGGCATGGCCATTGGCATCGTTGGTGATGCTGGTGTCAGgtaaagacgcttcctcttatcatattctgctatatgctttggtttggctgataatat-gctggtcaatgcagcagcagtaatggcaggcacttctaaaact---

upper sequence: AT1G75630.2 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GRMZM2G101020_T01 (Zea mays), 5'ss of exon 2
TATTCGATGGCTATGCTCATCTCTCTTCTGGGCTAGCTTGTGGTCTTGCTGGTCTCTCTGCTGGTATGGCTATTGGAATCGTCGGTGATGCTGGTGTTAGgtaattgctatctctgctacatgatcttaactg-tttgattgcagcaattttgatcgattttcacttgtttagaagtttctgagatagctttgttgtttgt-
| || || |||||||| || || || ||||| || || |||||||||||||| ||  |||| || ||||| ||||| ||||| |||||||||||||| |||| |   | ||  ||    |||  | | |  || |||||| |      |  | ||  || ||      |  || |||    |      |||       |   
TCTTTGACGGCTATGCCCACCTGTCGTCTGGCCTTGCCTGTGGTCTTGCTGGGCTTGCTGCAGGCATGGCCATTGGCATCGTTGGTGATGCTGGTGTCAGgtgaagacaattgctttatcatattgtgatatgctttgatggtttggctgataat--atgttggtaaatgcagtagtaatggcaggcacttctaaacctcca

upper sequence: AT1G75630.2 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA16G24220.1 (Glycine max), 5'ss of exon 2
TATTCGATGGCTATGCTCATCTCTCTTCTGGGCTAGCTTGTGGTCTTGCTGGTCTCTCTGCTGGTATGGCTATTGGAATCGTCGGTGATGCTGGTGTTAGgtaattgctatctctgctacatgatcttaactgtttgattgcagcaattttgatcgattttcacttgtttagaagtttctgagatagctttgttgtttgt--
| || || ||||| || || |||||||| || || |||||||| || ||||| ||||| ||||| ||||| || || ||||| || ||||| ||||||||||| |    || |    |  || ||  |    |||  ||||  ||   |    |   |||||| |  | | | |   |    | | | ||  | | |||   
TTTTTGACGGCTACGCCCACCTCTCTTCAGGTCTCGCTTGTGGCCTCGCTGGCCTCTCCGCTGGCATGGCCATCGGCATCGTTGGCGATGCCGGTGTTAGgtattcatcatttaaatttaatcatgcttcgagtt--attgttgctgctgctttatgttttcattaatgttgcatgcttgttgtttggttgatgggttgagt

upper sequence: AT1G75630.2 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA02G05630.1 (Glycine max), 5'ss of exon 2
TATTCGATGGCTATGCTCATCTCTCTTCTGGGCTAGCTTGTGGTCTTGCTGGTCTCTCTGCTGGTATGGCTATTGGAATCGTCGGTGATGCTGGTGTTAGgtaattgctatctctgctacat-gatcttaactgtttgattgcagcaattttgatcgattttcacttgtttagaagtttctgagatagctttgttgtttgt
| || || || || || || |||||||| || || |||||||| || ||||| ||||| ||||| ||||| || || ||||| || ||||| ||||||||||| |    ||      |  ||  | |||     | |   ||| ||  | |   |  | |    ||  || |    | |    |   | |||||  ||   
TCTTTGACGGTTACGCGCACCTCTCTTCGGGTCTCGCTTGTGGCCTCGCTGGCCTCTCCGCTGGCATGGCCATCGGCATCGTTGGCGATGCCGGTGTTAGgtattcatcattcaaattcaatcaagcttcgagttgttgctgctgctttatgctttcactaatgctgtttgattgatgtgctggtgtgttttgtaattca-

upper sequence: AT1G75630.2 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA01G37320.1 (Glycine max), 5'ss of exon 1
TATTCGATGGCTATGCTCATCTCTCTTCTGGGCTAGCTTGTGGTCTTGCTGGTCTCTCTGCTGGTATGGCTATTGGAATCGTCGGTGATGCTGGTGTTAGgtaattgctatc-tctgctacatgatcttaactgtttgattgcagcaattttgatcg-attttcacttgtttagaagtttctgagatagctttgttgtttgt
| ||||| ||||| ||||| ||||| || || ||  |||| ||||||||||| ||||| ||||| ||||| ||||| || || || || || ||||||||||| |  |  || | | ||||    ||||     || ||          | |  |   | ||    |  |  | | | ||  |   | | ||    |     
TCTTCGACGGCTACGCTCACCTCTCCTCCGGCCTCTCTTGCGGTCTTGCTGGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGACGCCGGTGTTAGgtattctcactccttttctactctctctttttctttcgaaaaagatgcgtgtagttataattattttcttgcatatggtttggtatttggttcaaggcca--

upper sequence: AT1G75630.2 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA11G07980.1 (Glycine max), 5'ss of exon 1
TATTCGATGGCTATGCTCATCTCTCTTCTGGGCTAGCTTGTGGTCTTGCTGGTCTCTCTGCTGGTATGGCTATTGGAATCGTCGGTGATGCTGGTGTTAGgtaattgctatc-tctgctacatgatcttaactgtttgattgcagcaattttgatcgattttcacttgtttagaagtttctgagatagctttgttgtttgt
| ||||| ||||| ||||| ||||| || || || ||||| || || ||||| ||||| ||||| ||||| ||||| || || || ||||| ||||||||||| |  |  || | | |||  |    ||  || |||  ||  | ||   | ||   |  | |   |  ||| || | | |      |  | |||   |  
TCTTCGACGGCTACGCTCACCTCTCCTCCGGCCTCGCTTGCGGCCTCGCTGGCCTCTCCGCTGGCATGGCCATTGGCATTGTTGGCGATGCCGGTGTTAGgtattctcactcattttctatttttctttttctttttacttataacatgatcgaataagatgcgtatagttataattattttcttgcgtatggttaggta-

upper sequence: AT1G75630.2 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: PP1S200_79V6.1 (Physcomitrella patens), 5'ss of exon 2
TATTCGATGGCTATGCTCATCTCTCTTCTGGGCTAGCTTGTGGTCTTGCTGGTCTCTCTGCTGGTATGGCTATTGGAATCGTCGGTGATGCTGGTGTTAGgtaattgctat--ctctgctacatgat--cttaactgtttgattgcagcaattttgatcgattttc-acttgtttagaagtttctgagatagctttgttgtttgt---------------------------------------------------------------------------------
| ||||| ||||| || || || || |||||  |  | |||||  | |||||||| || || || ||||| ||||| |||||||| ||||||||||||||||| |||  |   |  ||| |  ||      || |    |   |   | | ||    || ||  ||  |   | | ||      |   | ||  ||   |||  |                                                                                 
TGTTCGACGGCTACGCGCACCTTTCATCTGGATTGTCGTGTGGGTTGGCTGGTCTATCGGCAGGCATGGCCATTGGTATCGTCGGAGATGCTGGTGTTAGgtacttgacaaagccttgcaatgtggcgatgtaccaaaatacgttttgaagttggagtcaatagtctgccaatctggattcaattcgtagaggctttacgttcatgcacgtgatatctgaggatgctgagttgatgccatttgttgatcatgtccttgttaacttggaggatggggttttgtgcag

upper sequence: AT1G75630.2 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: EFJ33972 (Selaginella moellendorffii), 5'ss of exon 2
TATTCGATGGCTATGCTCATCTCTCTTCTGGGCTAGCTTGTGGTCTTGCTGGTCTCTCTGCTGGTATGGCTATTGGAATCGTCGGTGATGCTGGTGTTAGgtaa---ttgctatctctgctacatgatcttaactgtttgattg--cagcaattttgatcgatttt-cacttgtttagaagtttctgagatagctttgttgtttgt
| ||||||||||| || ||||||||||| ||  | ||||| || |||||||||||||| ||||| ||||| |||||||| || || || ||||| || ||||||   || | | ||||  | | |  | ||   | || || |      |  || |   || |        || | |  |  | | |   |||||    |      
TCTTCGATGGCTACGCGCATCTCTCTTCCGGATTGGCTTGCGGGCTTGCTGGTCTCTCGGCTGGGATGGCGATTGGAATTGTTGGAGACGCTGGAGTGAGgtaaagtttccaaactct--ttcttcgttttgcttcttcgactagttcacgcttgtagacggtcgagtgtctgctgactatctccagctttagctcaactaa----

upper sequence: AT1G75630.2 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: EFJ37480 (Selaginella moellendorffii), 5'ss of exon 2
TATTCGATGGCTATGCTCATCTCTCTTCTGGGCTAGCTTGTGGTCTTGCTGGTCTCTCTGCTGGTATGGCTATTGGAATCGTCGGTGATGCTGGTGTTAGgt-aattgctatctctgctacatgatcttaactgtttgattg--cagcaattttgatcgatttt-cacttgtttagaagtttctgagatagctttgttgtttgt
| ||||||||||| || ||||||||||| ||  | ||||| || |||||||| ||||| ||||| ||||| |||||||| || || || ||||| || |||| || |       ||  | | |  | ||     || || |      |  || |   || |        || | |  |  | | |   |||||    |      
TCTTCGATGGCTACGCGCATCTCTCTTCCGGATTGGCTTGCGGGCTTGCTGGCCTCTCGGCTGGGATGGCGATTGGAATTGTTGGAGACGCTGGAGTGAGgtcaagtttccaaactctttcttcgttttgctgcttcgaatagttcacgcttgtagacggtcgagtgtctgctgactatctccagctttagctcaactaa----

upper sequence: AT1G75630.2 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: EFJ14420 (Selaginella moellendorffii), 5'ss of exon 2
TATTCGATGGCTATGCTCATCTCTCTTCTGGGCTAGCTTGTGGTCTTGCTGGTCTCTCTGCTGGTATGGCTATTGGAATCGTCGGTGATGCTGGTGTTAGgtaattgctatctctgctacatgatcttaactgtttgattgcagcaattttgatcgattttcacttgtttagaagtttctgagatagctttgttgtttgt
| ||||||||||| |||||||| || || ||||| ||||| || || || |||||||| ||||| ||||| || || || |||||||| ||||| ||  ||||| | | |||  |   |    |||||   | || |||  |  ||   ||||| | |||    || |||  |                           
TGTTCGATGGCTACGCTCATCTATCGTCCGGGCTGGCTTGCGGCCTCGCGGGTCTCTCGGCTGGAATGGCAATCGGGATTGTCGGTGACGCTGGAGTCCGgtaagttcgatcgatcaaaagccatcttt-ttcttcgatatctcca---ttgattggtttgtttttctttgcag--------------------------

upper sequence: AT1G75630.2 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: EFJ26016 (Selaginella moellendorffii), 5'ss of exon 2
TATTCGATGGCTATGCTCATCTCTCTTCTGGGCTAGCTTGTGGTCTTGCTGGTCTCTCTGCTGGTATGGCTATTGGAATCGTCGGTGATGCTGGTGTTAGgtaattgctatctctgctacatgatcttaactgtttgattgcagcaattttgatcgattttcacttgtttagaagtttctgagatagctttgttgtttgt
| ||||||||||| |||||||| || || ||||| ||||| || || || |||||||| ||||| ||||| || || || |||||||| ||||| ||  ||||| | | |||  |   | |  |||||   | || |||  |  ||   ||||| | |||    || |||  |                           
TGTTCGATGGCTACGCTCATCTATCGTCCGGGCTGGCTTGCGGCCTCGCGGGTCTCTCGGCTGGAATGGCAATCGGGATTGTCGGTGACGCTGGAGTCCGgtaagttcgatcgatcaaaaaccatcttt-ttcttcgatatctcca---ttgattggtttgtttttctttgcag--------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125124092|gb|EL170245.1|EL170245
EST:     GGTCTCTCTGCTGGTATGGCTATTGGAATCGTCGGTGATGCTGGTGTTAG                         AGCGAATGCGCAACAA
genomic: GGTCTCTCTGCTGGTATGGCTATTGGAATCGTCGGTGATGCTGGTGTTAGgtaattgcta ... tattttgcagAGCGAATGCGCAACAA
EST: gi|124952800|gb|EL028042.1|EL028042
EST:     GGTCTCTCTGCTGGTATGGCTATTGGAATCGTCGGTGATGCTGGTGTTAG                         AGCGAATGCGCAA
genomic: GGTCTCTCTGCTGGTATGGCTATTGGAATCGTCGGTGATGCTGGTGTTAGgtaattgcta ... tattttgcagAGCGAATGCGCAA
EST: gi|124908251|gb|EH982331.1|EH982331
EST:     GGTCTCTCTGCTGGTATGGCTATTGGAATCGTCGGTGATGCTGGTGTTAG                         AGCGAATGCGCAACAACCGAAGCTGTTTGTGGG
genomic: GGTCTCTCTGCTGGTATGGCTATTGGAATCGTCGGTGATGCTGGTGTTAGgtaattgcta ... tattttgcagAGCGAATGCGCAACAACCGAAGCTGTTTGTGGG
EST: gi|124758564|gb|EH848694.1|EH848694
EST:     TGGAATCGTCGGTGATGCTGGTGTTAG                         AGCGAATGCGCAACAACCGAAGCTGTTTGTGGGAATGATTCTGATTCTCAT
genomic: TGGAATCGTCGGTGATGCTGGTGTTAGgtaattgcta ... tattttgcagAGCGAATGCGCAACAACCGAAGCTGTTTGTGGGAATGATTCTGATTCTCAT
EST: gi|124829583|gb|EH914174.1|EH914174
EST:     GGTGATGCTGGTGTTAG                         AGNGAATGCGCAACAACCGAAGCTGTTTGTGGGAATGATTCTGATTCTCAT
genomic: GGTGATGCTGGTGTTAGgtaattgcta ... tattttgcagAGCGAATGCGCAACAACCGAAGCTGTTTGTGGGAATGATTCTGATTCTCAT
EST: gi|125255941|gb|EL270026.1|EL270026
EST:     GGTCTCTCTGCTGGTATGGCTATTGGAATCGTCGGTGATGCTGGTGTTAG                         AGCGAATGCGCAACAACCGAAGCTGTTTGTGGG
genomic: GGTCTCTCTGCTGGTATGGCTATTGGAATCGTCGGTGATGCTGGTGTTAGgtaattgcta ... tattttgcagAGCGAATGCGCAACAACCGAAGCTGTTTGTGGG
EST: gi|124963371|gb|EL037712.1|EL037712
EST:     GATGCTGGTGTTAG                         AGCGAATGCGCAACAACCGAAGCTGTTTGTGGGAATGATTCTGATTCTCAT
genomic: GATGCTGGTGTTAGgtaattgcta ... tattttgcagAGCGAATGCGCAACAACCGAAGCTGTTTGTGGGAATGATTCTGATTCTCAT
EST: gi|124947514|gb|EL023346.1|EL023346
EST:     TATTGGAATCGTCGGTGATGCTGGTG-TAG                         AGCGAATGCGCAACAACCGAAGCTGTTTGTGGGAATGATTCTGATTCTCAT
genomic: TATTGGAATCGTCGGTGATGCTGGTGTTAGgtaattgcta ... tattttgcagAGCGAATGCGCAACAACCGAAGCTGTTTGTGGGAATGATTCTGATTCTCAT
EST: gi|164174900|gb|ES166605.1|ES166605
EST:     GGCTATTGGAATCGTCGGTGATGCTGGTGTTAG                         AGCGAATGCGCAACAACCGAAGCTGTTTGTGGGAATGATTCTGATTCTCAT
genomic: GGCTATTGGAATCGTCGGTGATGCTGGTGTTAGgtaattgcta ... tattttgcagAGCGAATGCGCAACAACCGAAGCTGTTTGTGGGAATGATTCTGATTCTCAT
EST: gi|125275942|gb|EL290027.1|EL290027
EST:     TGGCTATTGGAATCGTCGGTGATGCTGGTGTTAG                         AGCGAATGCGCAACAACCGAAGCTGTTTGTGGGAATAGATTCTGATTCTCA
genomic: TGGCTATTGGAATCGTCGGTGATGCTGGTGTTAGgtaattgcta ... tattttgcagAGCGAATGCGCAACAACCGAAGCTGTTTGTGGGAAT-GATTCTGATTCTCA
EST: gi|86079102|gb|DR374859.1|DR374859
EST:     GGTCTCTCTGCTGGTATGGCTATTGGAATCGTCGGTGATGCTGGTGTTAG                         AGCGAATGCGCAACAACCGAAGCTGTTTGTGGGAATGATTCTGATTCTCAT
genomic: GGTCTCTCTGCTGGTATGGCTATTGGAATCGTCGGTGATGCTGGTGTTAGgtaattgcta ... tattttgcagAGCGAATGCGCAACAACCGAAGCTGTTTGTGGGAATGATTCTGATTCTCAT
EST: gi|124822692|gb|EH907558.1|EH907558
EST:     GGTCTCTCTGCTGGTATGGCTATTGGAATCGTCGGTGATGCTGGTGTTAG                         AGCGAATGCGCAACAACC
genomic: GGTCTCTCTGCTGGTATGGCTATTGGAATCGTCGGTGATGCTGGTGTTAGgtaattgcta ... tattttgcagAGCGAATGCGCAACAACC
EST: gi|125197466|gb|EL212420.1|EL212420
EST:     TCTGCTGGTATGGCTATTGGAATCGTCGGTGATGCTGGTGTTAG                         AGCGAATGCGCAACAACCGAAGCTGTTTGTGGGAATGATT
genomic: TCTGCTGGTATGGCTATTGGAATCGTCGGTGATGCTGGTGTTAGgtaattgcta ... tattttgcagAGCGAATGCGCAACAACCGAAGCTGTTTGTGGGAATGATT
EST: gi|125025145|gb|EL097414.1|EL097414
EST:     GTCTCTTCTGCTGGTATGGCTATTGGAATCGTCGGTGATGCTGGTGTTAG                         AGCGAATGCGCAACAA
genomic: GTCTC-TCTGCTGGTATGGCTATTGGAATCGTCGGTGATGCTGGTGTTAGgtaattgcta ... tattttgcagAGCGAATGCGCAACAA
EST: gi|124778068|gb|EH868011.1|EH868011
EST:     GTCTCTCTGCTGGTATGGCTATTGGAATCGTCGGTGATGCTGGTGTTAG                         AGCGAATGCGCAACAACCGAAGCTGTTTGTGGGAATGATT
genomic: GTCTCTCTGCTGGTATGGCTATTGGAATCGTCGGTGATGCTGGTGTTAGgtaattgcta ... tattttgcagAGCGAATGCGCAACAACCGAAGCTGTTTGTGGGAATGATT
EST: gi|164111938|gb|ES183079.1|ES183079
EST:     TTGGAATCGTCGGTGATGCTGGTGTTAG                         AGCGAATGCGCAACAACCGAAGCTGTTTGTGGGAATGATTCTGATTCTCAT
genomic: TTGGAATCGTCGGTGATGCTGGTGTTAGgtaattgcta ... tattttgcagAGCGAATGCGCAACAACCGAAGCTGTTTGTGGGAATGATTCTGATTCTCAT
EST: gi|124825603|gb|EH910469.1|EH910469
EST:     CTGCTGGTATGGCTATTGGAATCGTCGGTGATGCTGGTGTTAG                         AGCGAATGCGCAACAACCGAAGCTGTTTGTGGGAATGATTCTGATTCT
genomic: CTGCTGGTATGGCTATTGGAATCGTCGGTGATGCTGGTGTTAGgtaattgcta ... tattttgcagAGCGAATGCGCAACAACCGAAGCTGTTTGTGGGAATGATTCTGATTCT
EST: gi|116455931|gb|EG498523.1|EG498523
EST:     GGTCTCTCTGCTGGTATGGCTATTGGAATCGTCGGTGATGCTGGTGTTAG                         AACGAATGCGCA
genomic: GGTCTCTCTGCTGGTATGGCTATTGGAATCGTCGGTGATGCTGGTGTTAGgtaattgcta ... tattttgcagAGCGAATGCGCA
EST: gi|124996126|gb|EL068395.1|EL068395
EST:     CGGTGATGCTGGTGTTAG                         AGCGAATGCGCAACAACCGAAGCTGTTTGTGGGAATGATTCTGATTCTCAT
genomic: CGGTGATGCTGGTGTTAGgtaattgcta ... tattttgcagAGCGAATGCGCAACAACCGAAGCTGTTTGTGGGAATGATTCTGATTCTCAT
EST: gi|125284283|gb|EL298368.1|EL298368
EST:     GGTCTCTCTGCTGGTATGGCTATTGGAATCGTCGGTGATGCTGGTGTTAG                         AGCGAATGCGCAACAACCGAAG
genomic: GGTCTCTCTGCTGGTATGGCTATTGGAATCGTCGGTGATGCTGGTGTTAGgtaattgcta ... tattttgcagAGCGAATGCGCAACAACCGAAG
EST: gi|125281999|gb|EL296084.1|EL296084
EST:     GGTCTCTCTGCTGGTACGGCTATTGGAATCGTCGGTGATGCTGGTGTTAG                         AGCGAATGCGCAACAACCGAAGCTGTTTGTGGGAA
genomic: GGTCTCTCTGCTGGTATGGCTATTGGAATCGTCGGTGATGCTGGTGTTAGgtaattgcta ... tattttgcagAGCGAATGCGCAACAACCGAAGCTGTTTGTGGGAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TATTCGATGGCTATGCTCATCTCTCTTCTGGGCTAGCTTGTGGTCTTGCTGGTCTCTCTGCTGGTATGGCTATTGGAATCGTCGGTGATGCTGGTGTTAGgtaattgctatctctgctacatgatcttaactgtttgattgcagcaattttgatcgattttcacttgtttagaagtttctgagatagctttgttgtttgt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctatctct