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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGTAAGATCGCGACTAATCGTCTTCAGAAAGAGCTTGTGGAATGGCAGATGAATCCACCTACTGGTTTCAAACACAAAGTCACTGATAATCTCCAAAGgtaaattatgaattaggtttactttattcttgttgagaatcatataagatttagaaattttgtgatgtcaaattcaatggtttgcag

Basic information

species Arabidopsis thaliana
transcript AT1G75440.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G75440.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv18s0001g13180.t01 (Vitis vinifera), 5'ss of exon 2
TGAGTAAGATCGCGACTAATCGTCTTCAGAAAGAGCTTGTGGAATGGCAGATGAATCCACCTACTGGTTTCAAACACAAAGTCACTGATAATCTCCAAAGgtaaattatgaattaggtttactttattctt-gttgagaatcatataagatttagaaattttgtgatgtcaaatt-caatggtttgcag
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TAAGCAAGATCGCCTGCAATCGCCTCCAGAAAGAGCTGGTGGAATGGCAGGTCAACCCTCCTGCGGGATTCAAGCATAAAGTCACAGATAATCTACAGAGgt----ttcgttttcgattgattttgttttttattttgatttgttttttatttttttattttttaaaaatggattgttttgatttaaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124878749|gb|EH958186.1|EH958186
EST:     CTGGTTTCAAACACAAAGTCACTGATAATCTCCAAAG                         ATGGATAATTGAAGTTATTGGAGCTCCAGGAACTCTATATGCCAACGATAC
genomic: CTGGTTTCAAACACAAAGTCACTGATAATCTCCAAAGgtaaattatg ... tggtttgcagATGGATAATTGAAGTTATTGGAGCTCCAGGAACTCTATATGCCAACGATAC
EST: gi|86078444|gb|DR374201.1|DR374201
EST:     ATGAATCCACCTACTGGTTTCAAACACAAAGTCACTGATAATCTCCAAAG                         ATGGATAATTGAAGTTATTGGAGCTCCAGGAACTCTATATGCCAACGATAC
genomic: ATGAATCCACCTACTGGTTTCAAACACAAAGTCACTGATAATCTCCAAAGgtaaattatg ... tggtttgcagATGGATAATTGAAGTTATTGGAGCTCCAGGAACTCTATATGCCAACGATAC