Sequence
atgc intronic sequence ATGC exonic sequenceCCTCGTATTGCTGGAGTCTACCTTCACATTGATCCTTTGAGTTGTGGGTGGGGAAAGGTTGAAGAAATTAGAAGGCATATCTTGAATTTTAAGAAATCAGgttactcctgaatctacattatctattgaatatcagagtttataattttccaattgtgttcatacatgcttcctgtgacctaatcatacacatcttgttag
Basic information
species | Arabidopsis thaliana |
transcript | AT1G73990.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT1G73990.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA05G07540.1 (Glycine max), 5'ss of exon 1
CCTCGTATTGCTGGAGTCTACCTTCACATTGATCCTTTGAGTTGTGGGTGGGGAAAGGTTGAAGAAATTAGAAGGCATATCTTGAATTTTAAGAAATCAGgttactcctgaatctacattatctattgaatatcagagtttataattttccaatt--gtgttcatacatgcttcctgtgacctaatcatacacatcttgttag
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CCTCGAATATCCGGCATCTATCTCCATATTGATGTTTTAAATTGTGGTTGGGCAAAGGTCGAAGAAATTCGAAGGCATATCTTGAATTTCAGAAATTCAGgtgcgtcaaattactgctctgctggaaaaaaaaaaaaaaaaaagaatgcaggaacaagtattgttaaaatgtaacttttttttaaatgt-tactttccgtt--
upper sequence: AT1G73990.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA17G09020.1 (Glycine max), 5'ss of exon 2
CCTCGTATTGCTGGAGTCTACCTTCACATTGATCCTTTGAGTTGTGGGTGGGGAAAGGTTGAAGAAATTAGAAGGCATATCTTGAATTTTAAGAAATCAGgttactcctgaatctacattatctattgaatatcagagtttataattttccaattgtgttcataca-tgcttcctgtgacctaatcatacacatcttgttag
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CCTCGAATTTCCGGCATCTATCTCCATATTGATATTTTAAATTGTGGTTGGGCAAAGGTCGAAGAAATTCGAAGACATATCTTGAATTTCAGAAAATCAGgtgcgtcaaattaccaaaatataattcagtaactagtattagtaataatgtaactatttttttttaatgttactttccatttttacaatcttgttttata--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|124996569|gb|EL068838.1|EL068838EST: GGGAAAGGTTGAAGAAATTAGAAGGCATATCTTGAATTTTAAGAAATCAG GTAAATTCATTGTTGGATATATCAGCATTTGTGGGCTAAAGG
genomic: GGGAAAGGTTGAAGAAATTAGAAGGCATATCTTGAATTTTAAGAAATCAGgttactcctg ... atcttgttagGTAAATTCATTGTTGGATATATCAGCATTTGTGGGCTAAAGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CCTCGTATTGCTGGAGTCTACCTTCACATTGATCCTTTGAGTTGTGGGTGGGGAAAGGTTGAAGAAATTAGAAGGCATATCTTGAATTTTAAGAAATCAGgttactcctgaatctacattatctattgaatatcagagtttataattttccaattgtgttcatacatgcttcctgtgacctaatcatacacatcttgttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA