Sequence
atgc intronic sequence ATGC exonic sequenceCTGATATTGTGTTTGATTACCGTCAGAAGGCGACGAGGTCCTTTGAACATCTTCAAGGAGATTATTACATTGCTCCATCGTTTCTGgtaaatgtttattcttcttcttgtaatctcattttgaagatatcctaattaatgattatctatttatcttgttaaaatgctttcaaactaagctttgatttgtgggaatatgtcaccaagttttcttataagaacatgtgtcttctttcttgacag
Basic information
species | Arabidopsis thaliana |
transcript | AT1G73110.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT1G73110.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: LOC_Os04g56320.1 (Oryza sativa), 5'ss of exon 2
CTGATATTGTGTTTGATTACCGTCAGAAGGCGACGAGGTCCTTTGAACATCTTCAAGGAGATTATTACATTGCTCCATCGTTTCTGgtaaatgtttattcttcttcttgtaatctcattttgaagatatcctaattaatgattatctatttatcttgtta-aaatgcttt-caaactaagctttgatttgtgggaatatgtcaccaagttttcttataagaacatgtgtcttctttcttgacag
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CGGATATTGTGTTCGATTACCGGCAGAAAGCGACCAGGACGTTTGAGTACCTGCAAGGAGATTATTACATCGCACCCCTCTTCCTTgtgagtgtaattttagttcatcttcagctgatcttttt--ttttttactgcatcctcgtacttttatgctgttctaggtacctgattgacaaagatttgacac-tgcagattcgttgtggtgcag---------------------------------
upper sequence: AT1G73110.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA13G44940.1 (Glycine max), 5'ss of exon 2
CTGATATTGTGTTTGATTACCGTCAGAAGGCGACGAGGTCCTTTGAACATCTTCAAGGAGATTATTACATTGCTCCATCGTTTCTGgtaaatgtttattcttcttcttgtaatctcattttgaagatatcctaattaatgattatctatttatcttgttaaaatgctttcaaactaagctttgatttgtgggaatatgtcaccaagttttcttataagaacatgtgtcttctttcttgacag
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CGGACATTGTCTTTGATTATCGTCAAAAAGTGACGAGGTCCTTTCAATACCTTCAGGGCGATTATTACATCGCTCCTCTCTTCATGgtac---tctact----ttcttatcaaatcatatt-----tattccaatt--tcattctctctctcaactttca-----tttttcagcttctcttcgcttctct----ttttttttttttttttttcacag-------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|124962890|gb|EL037263.1|EL037263EST: GGTCCTTTGAACATCTTCAAGGAGATTATTACATTGCTCCATCGTTTCTG GATAAAGTTG
genomic: GGTCCTTTGAACATCTTCAAGGAGATTATTACATTGCTCCATCGTTTCTGgtaaatgttt ... ttcttgacagGATAAAGTTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTGATATTGTGTTTGATTACCGTCAGAAGGCGACGAGGTCCTTTGAACATCTTCAAGGAGATTATTACATTGCTCCATCGTTTCTGgtaaatgtttattcttcttcttgtaatctcattttgaagatatcctaattaatgattatctatttatcttgttaaaatgctttcaaactaagctttgatttgtgggaatatgtcaccaagttttcttataagaacatgtgtcttctttcttgacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT