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GTAGCAGCTCCTTCGGAGATCTTGGGCAATGCAGCTGCAGAGCTTCATATACGCAAACCTACTCGTCTCGgtaaatactactgtttactcgtatcgcagatatttcctcattttgtgtttgtcttaagtttgatggttatctctcacttcag
species | Arabidopsis thaliana |
transcript | AT1G73020.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CTTGGGCAATGCAGCTGCAGAGCTTCATATACGCAAACCTACTCGTCTCG GAATTGATCTTCCCTTTGAGATGCAAGGGTCTGAGGCTTTCATTCGGCAACEST: gi|116423945|gb|EG466537.1|EG466537
genomic: CTTGGGCAATGCAGCTGCAGAGCTTCATATACGCAAACCTACTCGTCTCGgtaaatacta ... ctcacttcagGAATTGATCTTCCCTTTGAGATGCAAGGGTCTGAGGCTTTCATTCGGCAAC
EST: CTTGGGCAATGCAGCTGCAGAGCTTCATATACGCAAACCTACTCGTCTCG GAATTGATCTTCCCTTTGAGATGCAAGGGTCTGAGGCTTTCATTCGGCAACEST: gi|116436462|gb|EG479054.1|EG479054
genomic: CTTGGGCAATGCAGCTGCAGAGCTTCATATACGCAAACCTACTCGTCTCGgtaaatacta ... ctcacttcagGAATTGATCTTCCCTTTGAGATGCAAGGGTCTGAGGCTTTCATTCGGCAAC
EST: CTTGGGCAATGCAGCTGCAGAGCTTCATATACGCAAACCTACTCGTCTCG GAATTGATCTTCCCTTTGAGATGCAAGGGTCTGAGGCTTTCATTCGGCAACEST: gi|116436358|gb|EG478950.1|EG478950
genomic: CTTGGGCAATGCAGCTGCAGAGCTTCATATACGCAAACCTACTCGTCTCGgtaaatacta ... ctcacttcagGAATTGATCTTCCCTTTGAGATGCAAGGGTCTGAGGCTTTCATTCGGCAAC
EST: CTTGGGCAATGCAGCTGCAGAGCTTCATATACGCAAACCTACTCGTCTCG GAATTGATCTTCCCTTTGAGATGCAAGGGTCTGAGGCTTTCATTCGGCAACEST: gi|116436360|gb|EG478952.1|EG478952
genomic: CTTGGGCAATGCAGCTGCAGAGCTTCATATACGCAAACCTACTCGTCTCGgtaaatacta ... ctcacttcagGAATTGATCTTCCCTTTGAGATGCAAGGGTCTGAGGCTTTCATTCGGCAAC
EST: CTTGGGCAATGCAGCTGCAGAGCTTCATATACGCAAACCTACTCGTCTCG GAATTGATCTTCCCTTTGAGATGCAAGGGTCTGAGGCTTTCATTCGGCAACEST: gi|116436459|gb|EG479051.1|EG479051
genomic: CTTGGGCAATGCAGCTGCAGAGCTTCATATACGCAAACCTACTCGTCTCGgtaaatacta ... ctcacttcagGAATTGATCTTCCCTTTGAGATGCAAGGGTCTGAGGCTTTCATTCGGCAAC
EST: CTTGGGCAATGCAGCTGCAGAGCTTCATATACACAAACCTACTCGTCTCG GAATTGATCTTCCCTTTGAGATGCAAGGGTCTGAGGCTTTCATTCGGCAACEST: gi|164035789|gb|ES198648.1|ES198648
genomic: CTTGGGCAATGCAGCTGCAGAGCTTCATATACGCAAACCTACTCGTCTCGgtaaatacta ... ctcacttcagGAATTGATCTTCCCTTTGAGATGCAAGGGTCTGAGGCTTTCATTCGGCAAC
EST: AGCTTCATATACGCAAACCTACTCGTCTTCG GAATTGATCTTCCCTTTGAGATGCAAGGGTCTGAGGCTTTCATTCGGCAAEST: gi|116457900|gb|EG500492.1|EG500492
genomic: AGCTTCATATACGCAAACCTACTCGTC-TCGgtaaatacta ... ctcacttcagGAATTGATCTTCCCTTTGAGATGCAAGGGTCTGAGGCTTTCATTCGGCAA
EST: CTTGGGCAATGCAGCTGCAGAGCTTCATATACGCAAACCTACTCGTCTCG GAATTGATCTTCCCTTTGAGATGCAAGGGTCTGAGGCTTTCATTCGGCAACEST: gi|116435864|gb|EG478456.1|EG478456
genomic: CTTGGGCAATGCAGCTGCAGAGCTTCATATACGCAAACCTACTCGTCTCGgtaaatacta ... ctcacttcagGAATTGATCTTCCCTTTGAGATGCAAGGGTCTGAGGCTTTCATTCGGCAAC
EST: CTTGGGCAATGCAGCTGCAGAGCTTCATATACGCAAACCTACTCGTCTCG GAATTGATCTTCCCTTTGAGATGCAAGGGTCTGAGGCTTTCATTCGGCAACEST: gi|116457870|gb|EG500462.1|EG500462
genomic: CTTGGGCAATGCAGCTGCAGAGCTTCATATACGCAAACCTACTCGTCTCGgtaaatacta ... ctcacttcagGAATTGATCTTCCCTTTGAGATGCAAGGGTCTGAGGCTTTCATTCGGCAAC
EST: CTTGGGCAATGCAGCTGCAGAGCTTCATATACGCAAACCTACTCGTCTCG GAATTGATCTTCCCTTTGAGATGCAAGGGTCTGAGGCTTTCATTCGGCAAC
genomic: CTTGGGCAATGCAGCTGCAGAGCTTCATATACGCAAACCTACTCGTCTCGgtaaatacta ... ctcacttcagGAATTGATCTTCCCTTTGAGATGCAAGGGTCTGAGGCTTTCATTCGGCAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTAGCAGCTCCTTCGGAGATCTTGGGCAATGCAGCTGCAGAGCTTCATATACGCAAACCTACTCGTCTCGgtaaatactactgtttactcgtatcgcagatatttcctcattttgtgtttgtcttaagtttgatggttatctctcacttcag
- - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - GAGCTT