1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
AAGCGTTTGTTTCCACTGACGGCGTTTACAACGCCCGTGCTAGAGTTCTCGGTGGCGGTTCCTGTATTAACGCCGGTTTTTACTCCAGAGCCGATGCTGCgtaagtataatttttacctttttaagacaagaaaattatgttgtttattatatactactaaaaggatttattggtataatcgatgcctcgtgtcctagtg...
species | Arabidopsis thaliana |
transcript | AT1G72970.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GGTGGCGGTTCCTGTATTAACGCCGGTTTTTACTCCAGAGCCGATGCTGC GTTCGTGAAGCGAGCAGGATGGGATCCGAAGCTGGTGAAGGAGEST: gi|124873237|gb|EH954882.1|EH954882
genomic: GGTGGCGGTTCCTGTATTAACGCCGGTTTTTACTCCAGAGCCGATGCTGCgtaagtataa ... aaacattcagGTTCGTGAAGCGAGCAGGATGGGATCCGAAGCTGGTGAAGGAG
EST: TTTTACTCCAGAGCCGATGCTGC GTTCGTGAAGCGAGCAGGATGGGATCCGAAGCTGGTGAAGGAGTCGTATCCEST: gi|124858245|gb|EH942682.1|EH942682
genomic: TTTTACTCCAGAGCCGATGCTGCgtaagtataa ... aaacattcagGTTCGTGAAGCGAGCAGGATGGGATCCGAAGCTGGTGAAGGAGTCGTATCC
EST: TGGCGGTTCCTGTATTAACGCCGGTTTTTACTCCAGAGCCGATGCTGC GTTCGTGAAGCGAGCAGGATGGGATCCGAAGCTGGTGAAGGAGTCGTATCCEST: gi|164131851|gb|ES083738.1|ES083738
genomic: TGGCGGTTCCTGTATTAACGCCGGTTTTTACTCCAGAGCCGATGCTGCgtaagtataa ... aaacattcagGTTCGTGAAGCGAGCAGGATGGGATCCGAAGCTGGTGAAGGAGTCGTATCC
EST: GGTGGCGGTTCCTGTATTAACGCCGGTTTTTACTCCAGAGCCGATGCTGC GTTCGTGAAGCGAGCAGGATGGGATCCGAAGCTGGTGAAGGAGTCGTATCCEST: gi|164119743|gb|ES032725.1|ES032725
genomic: GGTGGCGGTTCCTGTATTAACGCCGGTTTTTACTCCAGAGCCGATGCTGCgtaagtataa ... aaacattcagGTTCGTGAAGCGAGCAGGATGGGATCCGAAGCTGGTGAAGGAGTCGTATCC
EST: GGTGGCGGTTCCTGTATTAACGCCGGTTTTTACTCCAGAGCCGATGCTGC GTTCGTGAAGCGANCAGGATGGGA
genomic: GGTGGCGGTTCCTGTATTAACGCCGGTTTTTACTCCAGAGCCGATGCTGCgtaagtataa ... aaacattcagGTTCGTGAAGCGAGCAGGATGGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGCGTTTGTTTCCACTGACGGCGTTTACAACGCCCGTGCTAGAGTTCTCGGTGGCGGTTCCTGTATTAACGCCGGTTTTTACTCCAGAGCCGATGCTGCgtaagtataatttttacctttttaagacaagaaaattatgttgtttattatatactactaaaaggatttattggtataatcgatgcctcgtgtcctagtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - actaaaag