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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATACGTTACGAGAACGTCTGCTTTGGAATATGAAGATTTCAATTCAGCTAAGTCTCGTCTTCTTGAACGTGCTGAGAAATTTGGGGAAATATCTTGCAAGgtacttccttttatggcttctggctcatatttagtagtttttgtacatatatcaatgaagtagatcaattagtatttgatagaagagggtttataaaggtttggttattgcgcag

Basic information

species Arabidopsis thaliana
transcript AT1G72340.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G72340.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA19G45180.1 (Glycine max), 5'ss of exon 2
ATACGTTACGAGAACGTCTGCTTTGGAATATGAAGATTTCAATTCAGCTAAGTCTCGTCTTCTTGAACGTGCTGAGAAATTTGGGGAAATATCTTGCAAGgta-cttccttttatggcttctggctcatatttagtagtttttgtacatatatcaatgaagtagatcaattagtatttgatagaagagggtttataaaggtttggttattgcgcag
||| || ||  | || |||||||| || |||||||| |||||||| |||||||||||  |  | |||||||||||||| ||||||||||| || | ||||| | |||||   | | ||| |   || || ||   |  |||    || | | |     |  |   |   ||  | ||||  ||                                 
ATATGTCACTCGCACTTCTGCTTTAGAGTATGAAGACTTCAATTCCGCTAAGTCTCGCTTGATCGAACGTGCTGAGAAGTTTGGGGAAATCTCCTACAAGgcaacttccaactctcgctgcactctaattttcttttctttcctcac-tctcttgcccattttcctttctttctttttg-cag---------------------------------

upper sequence: AT1G72340.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA03G42430.1 (Glycine max), 5'ss of exon 2
ATACGTTACGAGAACGTCTGCTTTGGAATATGAAGATTTCAATTCAGCTAAGTCTCGTCTTCTTGAACGTGCTGAGAAATTTGGGGAAATATCTTGCAAGgtacttccttttatggcttctggctcatatttagtagtttttgtacatatatcaatgaagtagatcaattagtatttgatagaagagggtttataaaggtttggttattgcgcag
||| || ||  | || |||||||| ||||| ||||| |||||||| |||||||||||  |  | || || |||||||| ||||| ||||| || | ||||| |  | |    |      ||  |||  ||||  |  | |||   ||  | ||       ||   |  ||  | ||||           |||  |                    
ATATGTCACTCGGACTTCTGCTTTAGAATACGAAGACTTCAATTCCGCTAAGTCTCGCTTGATCGAGCGCGCTGAGAAGTTTGGAGAAATCTCCTACAAGgcaaattcca--actctcactaactctaattttcttttctttcctcac-tctcgtgcccatattcctttttttttttgtccttc-----tttgcag-------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164107628|gb|EL980608.1|EL980608
EST:     TTTGGGGAAATATCTTGCAAG                         GCTCGTAGGATTATCGCAATGCTTAGTCAAGATTTTATATTCGATGGTTGT
genomic: TTTGGGGAAATATCTTGCAAGgtacttcctt ... tattgcgcagGCTCGTAGGATTATCGCAATGCTTAGTCAAGATTTTATATTCGATGGTTGT
EST: gi|164189677|gb|ES024392.1|ES024392
EST:     AGTCTCGTCTTCTTGAACGTGCTGAGAAATTTGGGGAAATATCTTGCAAG                         GCTCGTAGGATTATCGCAATGCTTAGTCAAG
genomic: AGTCTCGTCTTCTTGAACGTGCTGAGAAATTTGGGGAAATATCTTGCAAGgtacttcctt ... tattgcgcagGCTCGTAGGATTATCGCAATGCTTAGTCAAG