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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGGAAGCGGCTGTGCGAGAAGTGGCGAAGCTCTTACCCTTACCTGAACTTTTGCAGTCTATTTCTTCAATCAAGGCCGATTACATCGCTCGTCAACAGgtttgacatcttgcttttgaattgcaattggaactgaattggcttttgaagtatcatttgcactgagtattagtgattcctgagcaatgctagatttgagttgttaggttttgatatgctattgttatcttttattttcgattttctggaaatttttaatgacctgactagtgatgcttgctgtttcaatcag

Basic information

species Arabidopsis thaliana
transcript AT1G71820.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G71820.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv12s0034g02360.t01 (Vitis vinifera), 5'ss of exon 1
GAAGGAAGCGGCTGTGCGAGAAGTGGCGAAGCTCTTACCCTTACCTGAACTTTTGCAGTCTATTTCTTCAATCAAGGCCGATTACATCGCTCGTCAACAGgtttgacatcttgcttttgaattgcaattggaactgaattggcttttgaagtatcatttgcactgagtattagtgattcctgagcaatgctagatttgagttgttaggttttgatatgctattgttatcttttattttcgattttctggaaatttttaatgacctgactagtgatgcttgctgtttcaatcag
 ||||||| ||| || || || || || || || || ||  ||||||||||||||||||| ||||| ||||| ||||| ||||||||  | || ||||||||  ||    |   | |  ||||  |||   |    || |  || ||  | | |   ||    | | |   |    |   |||| |    |   | || ||   |                                                                                        
CAAGGAAGTGGCGGTTCGTGAGGTTGCCAAACTTTTGCCACTACCTGAACTTTTGCAGTCAATTTCGTCAATTAAGGCTGATTACATTACGCGCCAACAGgt--gatgcttctttgtccaatt-taat---agtcaaaatttctatttcaatttgggttagtttcaatcacatatgtaggtgagtatgtgtgtgtgtgtgtgtgtg---------------------------------------------------------------------------------------

upper sequence: AT1G71820.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv12s0034g02260.t01 (Vitis vinifera), 5'ss of exon 1
GAAGGAAGCGGCTGTGCGAGAAGTGGCGAAGCTCTTACCCTTACCTGAACTTTTGCAGTCTATTTCTTCAATCAAGGCCGATTACATCGCTCGTCAACAGgtttgacatcttgcttttgaattgcaattggaactgaattggcttttgaagtatcatttgcactgagtattagtgattcctgagcaatgctagatttgagttgttaggttttgatatgctattgttatcttttattttcgattttctggaaatttttaatgacctgactagtgatgcttgctgtttcaatcag
 ||||||||||| || || || || || || || || ||  ||||||||||||||||||| ||||| ||||||||||| ||||||||  | || ||||||||  ||    |   | |  ||||  |||   |    || |  || ||  | | |   ||    | | |   |    |   |||| |    |   | || ||   |                                                                                        
CAAGGAAGCGGCGGTTCGTGAGGTTGCCAAACTTTTGCCACTACCTGAACTTTTGCAGTCAATTTCGTCAATCAAGGCTGATTACATTACGCGCCAACAGgt--gatgcttctttgtccaatt-taat---agtcaaaatttctatttcaatttgggttagtttcaatcacatatgtaggtgagtacgtgtgtgtgtgtgtgtgtg---------------------------------------------------------------------------------------

upper sequence: AT1G71820.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv03s0097g00670.t01 (Vitis vinifera), 5'ss of exon 1
GAAGGAAGCGGCTGTGCGAGAAGTGGCGAAGCTCTTACCCTTACCTGAACTTTTGCAGTCTATTTCTTCAATCAAGGCCGATTACATCGCTCGTCAACAGgtttgacatcttgcttttgaattgcaattggaactgaattggcttttgaagtatcatttgcactgagtattagtgattcctgagcaatgctagatttgagttgttaggttttgatatgctattgttatcttttattttcgattttctggaaatttttaatgacctgactagtgatgcttgctgtttcaatcag
 ||||||||||| || || || || || || || || ||  ||||||||||||||||||| ||||| ||||| ||||| ||||||||  | || ||||||||  ||  | |   | |  ||||  |||||  |   ||||    ||| || |    ||       |  |    ||     |  |  |   |   | || ||   |  |                                                                                     
CAAGGAAGCGGCAGTTCGTGAGGTTGCCAAACTTTTGCCACTACCTGAACTTTTGCAGTCAATTTCATCAATTAAGGCTGATTACATTACACGCCAACAGgt--gatttttctttgtccaatt-taattgtca--aaatttctattttaaattgagttaatttcaatcacatatg-----taggtgagtgtgtgtgtgtgtgcatgcgcc-----------------------------------------------------------------------------------