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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTAGAGAAGCCAAATGGTATTACTCCGCCTTCCACAATGTCACGGCCATGGTTGGCGCCGGAGTTCTTGGTCTCCCTTTCGCCATGTCACAACTTGGCTGgtaattttttaagaaatgtttaaatttgtctgatcttaacttcacaaaataaagtcgtaatttaacgataaatttgttgctaacag

Basic information

species Arabidopsis thaliana
transcript AT1G71680.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G71680.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: PP1S5_176V6.1 (Physcomitrella patens), 5'ss of exon 2
CTAGAGAAGCCAAATGGTATTACTCCGCCTTCCACAATGTCACGGCCATGGTTGGCGCCGGAGTTCTTGGTCTCCCTTTCGCCATGTCACAACTTGGCTGgtaa---ttttttaagaaatgtttaaatttgtctgatcttaacttcacaaaataaagtcgtaatttaacgataaatttgttgctaacag-------------------
 | |  ||||||||||||  |||||||||||||||||||| || || ||||| ||||||||||| || ||  | ||   |||||||    |  |    |||| |    |  | | |   ||| ||| |  |||| |    |    ||||   | | || | | |||   |             |||| |                   
ATCGCAAAGCCAAATGGTGGTACTCCGCCTTCCACAATGTTACCGCAATGGTGGGCGCCGGAGTGCTGGGATTGCCCAACGCCATGGTCTACTTAACATGgtgagggctcctcacgttttgtctaa-tccgtctca---gagtcacacagtttcatgttgcagtttgcggcagtgggcacaagtaacggaatggctattcacatgcag

upper sequence: AT1G71680.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: EFJ10950 (Selaginella moellendorffii), 5'ss of exon 2
CTAGAGAAGCCAAATGGTATTACTCCGCCTTCCACAATGTCACGGCCATGGTTGGCGCCGGAGTTCTTGGTCTCCCTTTCGCCATGTCACAACTTGGCTGgtaattttttaagaaatgtttaaatttgt-----ctgatcttaacttcacaaaataaagtcgtaatttaacgataaatttgt-tgctaacag--------
| ||  | ||||| ||||  ||||| |||||||| |||||||| ||||||||||| || ||||||||| | ||||| |  || |||    | |||||||||||| || ||   |  | ||     ||       ||    | || ||| |  | |   |    || ||   | | | |  || |  |  ||         
CCAGGAACGCCAAGTGGTGGTACTCGGCCTTCCATAATGTCACCGCCATGGTTGGAGCTGGAGTTCTTAGCCTCCCCTCGGCGATGGTCTATCTTGGCTGgtaagttcttcgcagctcttcttcgtttcaatcgctagcttcaaattcgcttagtttcgatccaaattcttggtcagtcagtgttttctcattcgtgctc