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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGAAAGTGTTTAAGCAACCAAATTACCTTGAAAATTTTGTCCAGGCAACGTTCAATGCTCTTACTACAGAGAAAGTTAAAGgtaaagatctctcttacctctctttgattgttgttcaggtaaaggtcgatgattgcaaattccatctaagaaagagtatttgttaactttttcag

Basic information

species Arabidopsis thaliana
transcript AT1G70730.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19878337|gb|AU239168.1|AU239168
EST:     AAATTTTGTCCAGGCAACGTTCAATGCTCTTACTACAGAGAAAGTTAAAG                         GTGCGACACTTGTGGTTTCTGGTGATGGTCGTTATTATTCAGAGCAAGCTA
genomic: AAATTTTGTCCAGGCAACGTTCAATGCTCTTACTACAGAGAAAGTTAAAGgtaaagatct ... actttttcagGTGCGACACTTGTGGTTTCTGGTGATGGTCGTTATTATTCAGAGCAAGCTA
EST: gi|124991777|gb|EL064046.1|EL064046
EST:     CAACGTTCAATGCTCTTACTACAGAGAAAGTTAAAG                         GTGCGACACTTGTGGTTTCTGGTGATGGTCGTTATTATTCAGAGCAAGCTA
genomic: CAACGTTCAATGCTCTTACTACAGAGAAAGTTAAAGgtaaagatct ... actttttcagGTGCGACACTTGTGGTTTCTGGTGATGGTCGTTATTATTCAGAGCAAGCTA
EST: gi|124758634|gb|EH848764.1|EH848764
EST:     AAATTTTGTCCAGGCAACGTTCAATGCTCTTACTACAGAGAAAGTTAAAG                         GTGCGACACTTGTGGTTTCTGGTGATGGTCGTTATTATTCAGAGCAA
genomic: AAATTTTGTCCAGGCAACGTTCAATGCTCTTACTACAGAGAAAGTTAAAGgtaaagatct ... actttttcagGTGCGACACTTGTGGTTTCTGGTGATGGTCGTTATTATTCAGAGCAA