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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGAAAGGAATTGGAGATGGGACAGTGAGTTATGGAATGGATGATGCTGATGATATTTTGATGCAATCTTGGACTGGTACCATTCTTGGTCCTCATAATgttagttttcttcttctcaatctatctcttcatcttttgtttaacttaaatgataatatctatggtagatttgaataaagatgcattttttaatgctaaa...

Basic information

species Arabidopsis thaliana
transcript AT1G70660.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G70660.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: LOC_Os03g50440.1 (Oryza sativa), 5'ss of exon 2
TGAGAAAGGAATTGGAGATGGGACAGTGAGTTATGGAATGGATGATGCTGATGATATTTTGATGCAATCTTGGACTGGTACCATTCTTGGTCCTCATAATgttagttttcttcttctcaatctatctcttcatcttttgtttaacttaaatgataatatctatggtagatttgaataaagatgcattttttaatgctaaa
|||||| || ||||| |||||||||||||| ||||||||||||||||||||||| || |  ||||  || ||||| || || ||  |||| |||| ||||||  ||| | |    | || |        | | ||    ||     |  ||| | | |   |  |    |||  ||  | ||   | ||  |        
TGAGAAGGGCATTGGTGATGGGACAGTGAGCTATGGAATGGATGATGCTGATGACATATATATGCGTTCCTGGACAGGAACTATCATTGGCCCTCCTAATgtatgttgtataacacccattagtagatattaactgcatttgcttctgtatgctcaaactgaatgatcttttacattca-atttgtcttgcag-------

upper sequence: AT1G70660.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GRMZM2G090172_T02 (Zea mays), 5'ss of exon 2
TGAGAAAGGAATTGGAGATGGGACAGTGAGTTATGGAATGGATGATGCTGATGATATTTTGATGCAATCTTGGACTGGTACCATTCTTGGTCCTCATAATgttagttttcttcttctcaatctatctcttcatcttttgtttaacttaaatgataatatctatggtagatttgaataaagatgcattttttaatgctaaa
|||||| || ||||| ||||| || ||||| ||||| ||||||||||||||||| || |  ||||  || ||||| || || ||  |||||||||  |||||  | |       |  | ||       | |||  |   |||  ||| | |  |   |    ||  || ||| | |     |  |||||  |        
TGAGAAGGGCATTGGTGATGGAACTGTGAGCTATGGGATGGATGATGCTGATGACATATATATGCGGTCCTGGACAGGAACTATCATTGGTCCTCCCAATgtatgctgcagaaatacccatagtgagatacataatacatttt-ctttattattttcaaacctgagaggttttactgcg--tttattttgcag-------

upper sequence: AT1G70660.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA05G35000.1 (Glycine max), 5'ss of exon 2
TGAGAAAGGAATTGGAGATGGGACAGTGAGTTATGGAATGGATGATGCTGATGATATTTTGATGCAATCTTGGACTGGTACCATTCTTGGTCCTCATAATgttagttttcttcttctcaatctatctcttcatcttttgtttaactt------aaatgataatatctatggtagatttgaataaagatgcattttttaatgctaaa
|||||| |||||||||||||| || || || |||||||||||||||||||||||||| |  ||||| || |||||||| || ||| |||| || | |  ||| || | || | ||||      |  |  |  |  | ||   | ||       ||||  ||  |  ||   |   | |  | |   |||  |||| | |       
TGAGAAGGGAATTGGAGATGGAACTGTTAGCTATGGAATGGATGATGCTGATGATATCTACATGCAGTCCTGGACTGGGACTATTATTGGCCCCCCTGGTgtaagctgtcctgttctttggaaaaattgtgttactatgaaaacctctttgcaaaattgtagaacttactatttttatagaaatttatgagttttatcaa------

upper sequence: AT1G70660.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA07G24950.4 (Glycine max), 5'ss of exon 2
TGAGAAAGGAATTGGAGATGGGACAGTGAGTTATGGAATGGATGATGCTGATGATATTTTGATGCAATCTTGGACTGGTACCATTCTTGGTCCTCATAATgttagttttcttcttctcaatctatctcttc--atcttttgtttaacttaaatgataatatctatggtagatttgaataaagatgcattttttaatgctaaa--
|||||| |||||||| ||||| || || || ||||||||||||||||||||||| || |  ||||||||||||||||| || ||  | ||||| | || ||| ||||    |||  |   | |  | | |   |         |||| |   |  |    ||||||  | | |  ||||    |     ||| | ||       
TGAGAAGGGAATTGGGGATGGAACTGTTAGCTATGGAATGGATGATGCTGATGACATATACATGCAATCTTGGACTGGGACTATCATCGGTCCCCCTAGTgtaagttgctgtctgttatttttgacacattggaatccccagctaacatccctatttgcttctatgacaaagt-aaatat---tttgaatttcagtgggggctt

upper sequence: AT1G70660.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA08G04710.1 (Glycine max), 5'ss of exon 2
TGAGAAAGGAATTGGAGATGGGACAGTGAGTTATGGAATGGATGATGCTGATGATATTTTGATGCAATCTTGGACTGGTACCATTCTTGGTCCTCATAATgttagttttcttcttctcaatctatctcttcatcttttgttta-acttaaatgataatatctatggtag-atttgaataaagatgcattt-tttaatgctaaa
|||||| |||||||||||||| || || || || ||||||||||||||||||||||| |  ||||| || |||||||| || ||| |||| || | |  ||| || |||  | ||||      |  |  |  |    || | | |  |     | | |    |   ||  ||||  ||| | ||  |    | ||  |||   
TGAGAAGGGAATTGGAGATGGAACTGTTAGCTACGGAATGGATGATGCTGATGATATCTACATGCAGTCCTGGACTGGGACTATTATTGGCCCCCCTGGTgtaagcttttctgttctttggagaaattctgttacaatgataacatctttgcaaaattgcagaacttattatttttatagaaatttaagagtctacggct---

upper sequence: AT1G70660.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA09G22600.1 (Glycine max), 5'ss of exon 2
TGAGAAAGGAATTGGAGATGGGACAGTGAGTTATGGAATGGATGATGCTGATGATATTTTGATGCAATCTTGGACTGGTACCATTCTTGGTCCTCATAATgttagttttcttcttctcaatctatctcttcatcttttgtttaacttaaatgataatatctatggtagatttgaat---aaagatgcattttttaatgctaaa-
|||||| |||||||| ||||| || || || |||||||||||||| ||||| || || |  ||||||||||||||||| || ||  |||| || | |  ||| || |    ||| ||   | | |    | ||  ||| |||  |||  || |   ||| | ||  | ||| ||||    |     |||   |    |||    
TGAGAAGGGAATTGGGGATGGAACTGTTAGCTATGGAATGGATGACGCTGACGACATATACATGCAATCTTGGACTGGGACTATCATTGGGCCCCCTGGTgtaagctgctctctgct---tttctgaaataataatttatttttcttttatta-gttatttttgacacattggaatctccagctaacatccctatcagcttcta

upper sequence: AT1G70660.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv01s0011g05630.t01 (Vitis vinifera), 5'ss of exon 2
TGAGAAAGGAATTGGAGATGGGACAGTGAGTTATGGAATGGATGATGCTGATGATATTTTGATGCAATCTTGGACTGGTACCATTCTTGGTCCTCATAATgttagttttcttcttctcaatctatctct-tcatcttttgtttaacttaaatgat-aatatctatggtagatttgaataaag-atgcattttttaatgctaaa
 || || |||||||| ||||| || || ||||||||||||||||||||||||||||| |  ||||| || |||||||| || ||  ||||||||| |||||| |||||| |  || |||  | || |   | || |  ||     |||| | | | ||| |||    ||||| | || ||   |||   ||  || |      
GGAAAAGGGAATTGGCGATGGAACTGTCAGTTATGGAATGGATGATGCTGATGATATATACATGCAGTCGTGGACTGGGACTATCATTGGTCCTCCTAATgtgagttttttctttttcacacaattttcatgatataatgaactccttacaggttgaatctctcaactagatgttaagaatttatgtggttggtattatc---

upper sequence: AT1G70660.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: PP1S311_60V6.1 (Physcomitrella patens), 5'ss of exon 2
TGAGAAAGGAATTGGAGATGGGACAGTGAGTTATGGAATGGATGATGCTGATGATATTTTGATGCAATCTTGGACTGGTACCATTCTTGGTCCTCATAATgttagttttcttcttc-tcaatctatctcttc-atcttttgtttaac--ttaaatgat-aatatctatggtagatttgaataaagatgcattttttaatgctaaa
|||||||||||||||||| ||||| || |||||||| ||||| || | ||| ||| | || ||||  |||||||| || |||||  |||| ||  || | || ||||||        |  |  ||||| | | ||   | || |  |  || |  | | |||||  |   |    ||||| ||       ||||| | |      
TGAGAAAGGAATTGGAGACGGGACTGTTAGTTATGGCATGGACGACGGTGACGATGTGTTAATGCGCTCTTGGACCGGAACCATAATTGGACCGAATCACgtgagtttttgagacaatggaattatctttacgattagtagtctgtcggttcagcgttgaatattcacaattttgttgaacaatagcctttttttcagtt-----