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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCTCAGATGGAGATAAAATAGATTGTGTTTCAACTCATCAGCAACCAGCTTTCGATCATCCTCTCTTACAAGGACAAAAACCATTGgtaaatattattttccctcctcttctccattttatctcttttcattagtattcttatcaaagatttcaaatgttcttatttag

Basic information

species Arabidopsis thaliana
transcript AT1G70550.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G70550.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv01s0127g00010.t01 (Vitis vinifera), 5'ss of exon 2
AGCTCAGATGGAGATAAAATAGATTGTGTTTCAACTCATCAGCAACCAGCTTTCGATCATCCTCTCTTACAAGGACAAAAACCATTGgtaaata---ttattttccctcctcttctccattttatctcttttcattagtattcttatcaaagatttcaaatgttcttatttag--------------------------------------
||  | ||||| |||   || |||||||||  | |||||| |||||||||||| |||||||| |  ||| ||||||| ||||||||||||| |    || | |||||  |   | |  ||| | |   ||||| ||||  ||   |      |||| | |  |    ||                                          
AGTCCTGATGGTGATCTGATTGATTGTGTTCTATCTCATCTGCAACCAGCTTTTGATCATCCACAATTAAAAGGACAGAAACCATTGgtaattcagtttttcttcccgaccaattttgattcttttctttttctttaggttttggaattctcattttagagctgtacatgggaattcgagcagcaagtgttcatttctgtcttgattgcag