Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGATTCTTAATGGGTTTATCTCAAATCATGGCTCTTCACTAATGAAATGGTTATGGTCACTCAAAACCACAACCAAAACAAgttcgaatcctcttccattttctgatcataaagtttgctttttaatctttttctaacgaataaaggtttctctttttttatgaatcag

Basic information

species Arabidopsis thaliana
transcript AT1G70280.2
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164217832|gb|ES001706.1|ES001706
EST:     TAATGAAATGGTTATGGTCACTCAAAACCACAACCAAAACAA                         CTATTGCAACGAGATCGATGGTGAAATTCGAAAATGGGTATAGTGTAGAGA
genomic: TAATGAAATGGTTATGGTCACTCAAAACCACAACCAAAACAAgttcgaatcc ... tatgaatcagCTATTGCAACGAGATCGATGGTGAAATTCGAAAATGGGTATAGTGTAGAGA
EST: gi|124709915|gb|EH801317.1|EH801317
EST:     CTCTTCACTAATGAAATGGTTATGGTCACTCAAAACCACAACCAAAACAA                         CTATTGCAACG
genomic: CTCTTCACTAATGAAATGGTTATGGTCACTCAAAACCACAACCAAAACAAgttcgaatcc ... tatgaatcagCTATTGCAACG