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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGTAGACCTCCTAAAGGAATCAAAACTGACTGGATCATGCATGAGTATCGTCTCCATGATTCACGTAAAGCATCAACGAAACGTAACGGTTCCATGAGGgtacgtaagcagaggaaacaagtttatagctcttgtatattttattacaacttgtgaaaatgttaattttctttatatttttgcag

Basic information

species Arabidopsis thaliana
transcript AT1G69490.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|47830767|gb|CK120451.1|CK120451
EST:     GTCTCCATGATTCACGTAAAGCATCAACGAAACGTAACGGTTCCATGAGG                         TTAGATGAATGGGTACTGTGTAGGATATACAAGAAGAGAGGAGCAAGTAAG
genomic: GTCTCCATGATTCACGTAAAGCATCAACGAAACGTAACGGTTCCATGAGGgtacgtaagc ... atttttgcagTTAGATGAATGGGTACTGTGTAGGATATACAAGAAGAGAGGAGCAAGTAAG
EST: gi|116411169|gb|EG453761.1|EG453761
EST:     GTCTCCATGATTCACGTAAAGCATCAACGAAACGTAACGGTTCCATGATG                         TTAGATGAATGGGTACTGTGTAGGATATACAAGAAGAGAGGAGCAAGTAAG
genomic: GTCTCCATGATTCACGTAAAGCATCAACGAAACGTAACGGTTCCATGAGGgtacgtaagc ... atttttgcagTTAGATGAATGGGTACTGTGTAGGATATACAAGAAGAGAGGAGCAAGTAAG