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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTCGCATTCATGACCAAGAGTGATGTGGATAATCTTGAAGATGGATATCGATGGCGTAAATATGGACAAAAAGCCGTCAAGAATAGCCCATTCCCAAGgtcgtatataagtcatcagtttctttgatcattctcttagttaacggatatgcaacctatatttcttattgttgttgtgatatatag

Basic information

species Arabidopsis thaliana
transcript AT1G69310.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G69310.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv01s0011g00720.t01 (Vitis vinifera), 5'ss of exon 2
GATTCGCATTCATGACCAAGAGTGATGTGGATAATCTTGAAGATGGATATCGATGGCGTAAATATGGACAAAAAGCCGTCAAGAATAGCCCATTCCCAAGgt------cgtatataagtca--tcagtttct-----ttgatcattctcttagttaa---cggatatgcaacctatatttcttattgttgttgtgatatatag
| || || || |||||||||||||| || ||| |||||||||| || ||||| ||||| || ||||||||||| || || || ||||| || || || ||||      |   | ||| | |  | || ||||     |  |  | | |   ||| ||   | |  || ||||| || | |   ||     |||||   | |  
GCTTTGCGTTTATGACCAAGAGTGAAGTTGATCATCTTGAAGACGGCTATCGCTGGCGGAAGTATGGACAAAAGGCTGTTAAAAATAGTCCTTTTCCTAGgtttgtggctcctttaatttaatttagcttctgtagctcaacaactgttacagtcaatttcagcaattcaaccaatttcttgcatgaagtttgtgg-gtct--

upper sequence: AT1G69310.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: PP1S35_401V6.1 (Physcomitrella patens), 5'ss of exon 4
GATTCGCATTCATGACCAAGAGTGATGTGGATAATCTTGAAGATGGATATCGATGGCGTAAATATGGACAAAAAGCCGTCAAGAATAGCCCATTCCCAAGgtcgtatata-agtcatcagtttctttgatcattctcttagttaacggatatgcaacctatatttcttattgttgttgtgatatatag------------
||| |||  |||  ||||  |  |||||||||  ||| || ||||| | |   |||||||||||||||||||||||||| |||||||||||    || ||||   || || |  | |   ||| |||  |  || | ||  ||      ||   |  | |  |||   ||  |  | |    |||               
GATACGCTATCAAAACCAGAACAGATGTGGATGTTCTCGATGATGGGTTTAAGTGGCGTAAATATGGACAAAAAGCCGTGAAGAATAGCCCTCATCCCAGgtaagatctagaacctttttttttttttttttttttttttttttttttttaaagactccaactttaggataataatagcaggataccattagctagtgtt

upper sequence: AT1G69310.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: EFJ10059 (Selaginella moellendorffii), 5'ss of exon 1
GATTCGCATTCATGACCAAGAGTGATGTGGATAATCTTGAAGATGGATATCGATGGCGTAAATATGGACAAAAAGCCGTCAAGAATAGCCCATTCCCAAGgt-cgtatataagtcatcagtttctttgatcattctcttagttaacggatatgcaacctatatttcttattgttgttgtgatatatag----------------
| |  ||  |    |||||||| ||   ||| |   | || ||||| || || ||| | || || |||||||| ||||||||||| ||||||| |||||||| ||||    || | ||  ||  |  ||  |       ||   |  || | || |   ||   |   ||||  |   |   ||  |                 
GGTATGCCATACAAACCAAGAGCGACAAGGAGATCATGGACGATGGCTACCGGTGGAGGAAGTACGGACAAAAGGCCGTCAAGAACAGCCCATACCCAAGgtgcgtacggcaggcctccattg-tgagaggagagagagag---agagagaggcgaggaatgcgttgaattggggccattggattgaccacctccacgatcgac