1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TGAACATGAATCTTCTCCAGAACTTGTGAATAATAAGAAATCAGATTGGCTTAGATCTGTTCAGCTATGGAATCATTCACCGGATCTAAATCCAAAAGAGgtatttaaagttttgagctttttaaaggagttttagttttcgattatgaggaaataatcatgtgttaattgaattatag
species | Arabidopsis thaliana |
transcript | AT1G68670.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CTATGGAATCATTCACCGGATCTAAATCCAAAAGAG GAGCGTGTAGCTAAGAAAGCGAAAGTGGTGGAGGTGAAACCAAAAAAGCGGEST: gi|124928487|gb|EL006129.1|EL006129
genomic: CTATGGAATCATTCACCGGATCTAAATCCAAAAGAGgtatttaaag ... tgaattatagGAGCGTGTAGCTAAGAAAGCGAAAGTGGTGGAGGTGAAACCAAAAA-GCGG
EST: ATGGAATCATTCACCGGATCTAAATCCAAAAGAG GAGCGTGTAGCTAAGAAAGCGAAAGTGGTGGAGGTGAAACCAAAAAGCGGTEST: gi|125036453|gb|EL108722.1|EL108722
genomic: ATGGAATCATTCACCGGATCTAAATCCAAAAGAGgtatttaaag ... tgaattatagGAGCGTGTAGCTAAGAAAGCGAAAGTGGTGGAGGTGAAACCAAAAAGCGGT
EST: TTAGATCTGTTCAGCTATGGAATCATTCACCGGATCTAAATCCAAAAGAG GAGCGTGTAGCTAAGAAAGCGAAAGTGGTEST: gi|125065335|gb|EL132601.1|EL132601
genomic: TTAGATCTGTTCAGCTATGGAATCATTCACCGGATCTAAATCCAAAAGAGgtatttaaag ... tgaattatagGAGCGTGTAGCTAAGAAAGCGAAAGTGGT
EST: CTAAATCCAAAAGAG GAGCGTGTAGCTAAGTAAAGCGAAAGTGGTGGAGGTGAAACCAAAAAGCGG
genomic: CTAAATCCAAAAGAGgtatttaaag ... tgaattatagGAGCGTGTAGCTAAG-AAAGCGAAAGTGGTGGAGGTGAAACCAAAAAGCGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAACATGAATCTTCTCCAGAACTTGTGAATAATAAGAAATCAGATTGGCTTAGATCTGTTCAGCTATGGAATCATTCACCGGATCTAAATCCAAAAGAGgtatttaaagttttgagctttttaaaggagttttagttttcgattatgaggaaataatcatgtgttaattgaattatag
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