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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACAGCCATTGACATGTGGTCACTGGGCTGTATCATGGCAGAACTATTAATGAAGGCGCCATTGTTCAATGGGAAAACGGAGTTTGATCAACTTGACAAGgtattttaaacatcggttttgatttggatctccagccatcctgggaccacatacagcttataaattactccttctttaatttacag

Basic information

species Arabidopsis thaliana
transcript AT1G67580.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G67580.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: LOC_Os02g39010.1 (Oryza sativa), 5'ss of exon 3
TACAGCCATTGACATGTGGTCACTGGGCTGTATCATGGCAGAACTATTAATGAAGGCGCCATTGTTCAATGGGAAAACGGAGTTTGATCAACTTGACAAGgtattttaaacatcggttttgatttggatctccagccatcctgggaccacatacagcttataaattactccttctttaatttacag
||| || ||||| ||||||||| |||| || || |||| |||||| |||   || | |||| |||||||||||||||  ||| | ||||||||||| ||||||| |      | |  |||  | |   ||   | |  |  |  ||  |   | | ||||| |   | |  ||       || |||
TACTGCTATTGATATGTGGTCATTGGGTTGCATTATGGGAGAACTCTTATCAAAAGGGCCACTGTTCAATGGGAAAAGCGAGATAGATCAACTTGATAAGgtatat--ggttttgacttttgtctat-tccatatctttattttgattaaggaaatcttatgatgaagtgatttcca---ttgcag

upper sequence: AT1G67580.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA05G27820.1 (Glycine max), 5'ss of exon 5
TACAGCCATTGACATGTGGTCACTGGGCTGTATCATGGCAGAACTATTAATGAAGGCGCCATTGTTCAATGGGAAAACGGAGTTTGATCAACTTGACAAGgtattttaaacatcgg------ttttgatttggatctccagccatcctgggaccacatacagcttata---aattactccttctttaatttacag-------------------------
 ||||||||||||||||||||  | || ||||| ||||| || |||||    |||| |||| | || ||||||||||| ||||||||||||||||||||||||| |  ||  |  |      | ||| ||   || ||         |    ||        ||| |    ||  |||   |  ||  ||||||                          
AACAGCCATTGACATGTGGTCTTTAGGTTGTATAATGGCTGAGCTATTGTCTAAGGAGCCACTATTTAATGGGAAAACAGAGTTTGATCAACTTGACAAGgtatgtgtaatgtttggtacattcttgcttcatatttctctttccttttaaccctttggtgtcttttgcttaaccacttggtggttgttttacactattgacctgttattctacttgtag

upper sequence: AT1G67580.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA08G10810.1 (Glycine max), 5'ss of exon 2
TACAGCCATTGACATGTGGTCACTGGGCTGTATCATGGCAGAACTATTAATGAAGGCGCCATTGTTCAATGGGAAAACGGAGTTTGATCAACTTGACAAGgtattttaaacatcggttttgatttggat--ctccagccatcctgggacca----catacagcttataaattactccttctttaatttacag----------------------------------------
 ||||||||||||||||||||  | || ||||| ||||| || |||||    ||||  ||| |||| ||||||| ||| ||||||||||||||||||||||||| |  ||  |   |||   ||| |||   ||  || ||| |    |      | |  | | | |   |  ||  | ||| |    |  |                                        
AACAGCCATTGACATGTGGTCTTTAGGTTGTATAATGGCTGAGCTATTGTCTAAGGAACCACTGTTTAATGGGAGAACAGAGTTTGATCAACTTGACAAGgtatgtgtaatttttttttaatttttgataattcttgctatcatatttctctttccttttaaccttttggtgtcttgtgcttaaccagatggtggttgttttaccctattgacttcgttattctacttgtag

upper sequence: AT1G67580.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA18G01230.1 (Glycine max), 5'ss of exon 4
TACAGCCATTGACATGTGGTCACTGGGCTGTATCATGGCAGAACTATTAATGAAGGCGCCATTGTTCAATGGGAAAACGGAGTTTGATCAACTTGACAAGgtat-tttaaacatcggttttgatttggatctccagccatcctgggaccacatacagcttataaattactccttctttaatttacag
 |||||||||||||||||||| ||||| ||||| ||||| || |||||    ||||  ||| |||| |||||||  || || ||||| ||||||||||||||||   | |||| |  ||| || ||| |                                                          
AACAGCCATTGACATGTGGTCTCTGGGTTGTATAATGGCTGAGCTATTGTCCAAGGAACCACTGTTTAATGGGAGGACTGAATTTGAACAACTTGACAAGgtatgcattaacaccattttagacttgtag---------------------------------------------------------

upper sequence: AT1G67580.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA11G37270.1 (Glycine max), 5'ss of exon 2
TACAGCCATTGACATGTGGTCACTGGGCTGTATCATGGCAGAACTATTAATGAAGGCGCCATTGTTCAATGGGAAAACGGAGTTTGATCAACTTGACAAGgtattt-taaacatcggttttgatttggatctccagccatcctgggaccacatacagctt--ataaattactccttctttaatttacag--------------------------------
 |||||||||||||||||||| ||||| ||||| ||||| || |||||    ||||  ||  | || |||||||| || || ||||| ||||||||||||||||   | |||  |  ||| || ||| |          || ||    ||| |    |||  || | ||  | | |||| || |  |                                  
AACAGCCATTGACATGTGGTCTCTGGGTTGTATAATGGCTGAGCTATTGTCCAAGGAACCTCTATTTAATGGGAAGACTGAATTTGAACAACTTGACAAGgtatgcattaacgccattttagacttgtagtggataagttcttgctctcactttggtctttcatcattttgtgcctcttcaagtggcgtaggtctattaacatttattaatttacttgcag