1 5' 3' | 2 5' 3' | 3 5' 3' |
TGCCTCTAAATTTGGAGCTGAATGCATTGGCATTACTCTCAGCCCTGTTCAGGCCAAGAGAGCCAATGATCTCGCGGCTGCTCAATCACTCGCTCATAAGgtagctttggataaaacataacctttcattttgtgaaaatttcatctaacgtatggacattggacttctag
species | Arabidopsis thaliana |
transcript | AT1G64970.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AGGCCAAGAGAGCCAATGATCTCGCGGCTGCTCAATCACTCTCTCATAAG GCTTCCTTCCAAGTTGCGGATGCGTTGGATCAGCCATTCGAAGAEST: gi|86030506|gb|DR326259.1|DR326259
genomic: AGGCCAAGAGAGCCAATGATCTCGCGGCTGCTCAATCACTCGCTCATAAGgtagctttgg ... ggacttctagGCTTCCTTCCAAGTTGCGGATGCGTTGGATCAGCCATTCGAAGA
EST: NNNCCAAGAGAGCCAATGATCTCGCGGCTGCTCAATCACTCTCTCATAAG GCTTCCTTCCAAGTTGCGGATGCGTTGGATCAGCCATTCGAAGATGGAAAAEST: gi|86030490|gb|DR326243.1|DR326243
genomic: AGGCCAAGAGAGCCAATGATCTCGCGGCTGCTCAATCACTCGCTCATAAGgtagctttgg ... ggacttctagGCTTCCTTCCAAGTTGCGGATGCGTTGGATCAGCCATTCGAAGATGGAAAA
EST: AGGCCAAGAGAGCCAATGATCTCGCGGCTGCTCAATCACTCTCTCATAAG GCTTCCTTCCAAGTTGCGGATGCGTTGGATCAGCCATTCGAAGATGGAAAAEST: gi|86030471|gb|DR326224.1|DR326224
genomic: AGGCCAAGAGAGCCAATGATCTCGCGGCTGCTCAATCACTCGCTCATAAGgtagctttgg ... ggacttctagGCTTCCTTCCAAGTTGCGGATGCGTTGGATCAGCCATTCGAAGATGGAAAA
EST: AGGCCAAGAGAGCCAATGATCTCGCGGCTGCTCAATCACTCTCTCATAAG GCTTCCTTCCAAGTTGCGGATGCGTTGGATCAGCCATTCGAAGATGGAAAAEST: gi|86030498|gb|DR326251.1|DR326251
genomic: AGGCCAAGAGAGCCAATGATCTCGCGGCTGCTCAATCACTCGCTCATAAGgtagctttgg ... ggacttctagGCTTCCTTCCAAGTTGCGGATGCGTTGGATCAGCCATTCGAAGATGGAAAA
EST: AGGCCAAGAGAGCCAATGATCTCGCGGCTGCTCAATCACTCTCTCATAAG GCTTCCTTCCAAGTTGCGGATGCGTTGGATCAGCCATTCGAAGATGGAAAA
genomic: AGGCCAAGAGAGCCAATGATCTCGCGGCTGCTCAATCACTCGCTCATAAGgtagctttgg ... ggacttctagGCTTCCTTCCAAGTTGCGGATGCGTTGGATCAGCCATTCGAAGATGGAAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCCTCTAAATTTGGAGCTGAATGCATTGGCATTACTCTCAGCCCTGTTCAGGCCAAGAGAGCCAATGATCTCGCGGCTGCTCAATCACTCGCTCATAAGgtagctttggataaaacataacctttcattttgtgaaaatttcatctaacgtatggacattggacttctag
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT