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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTATGGCTTTGGAAAGGGAGAGATCGGTCAGCTCTTTATTGCTGGTTTTGGATCTTCCATGTTGTTTGGCACCATTGTTGGATCTCTTGCCGACAAACAgtcagcatttcttcttctgaattatacttcacctattgtttgtttggatcttcttcaatgactctgtaacttactctcttaattag

Basic information

species Arabidopsis thaliana
transcript AT1G64650.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G64650.2 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: PP1S18_8V6.2 (Physcomitrella patens), 5'ss of exon 2
CTTATGGCTTTGGAAAGGGAGAGATCGGTCAGCTCTTTATTGCTGGTTTTGGATCTTCCATGTTGTTTGGCACCATTGTTGGATCTCTTGCCGACAAACAgtcagcatttcttcttctgaattatacttcacctattgtttgtttggatcttcttcaatgactctgtaacttactctcttaattag---------------
 ||| || |     || || || |||||  |||| || || ||||| |||||||| |||||| | || || || ||||||||||||||||||||   | ||| ||  || | |    | | ||  |  | | |    ||   | |  |   ||| |    |    || |   ||  |  || |||                
TTTACGGGTACAATAAAGGTGATATCGGAAAGCTTTTCATAGCTGGATTTGGATCATCCATGCTTTTCGGGACTATTGTTGGATCTCTTGCCGATCGATAgtaagtgttccatgccatcatttgcatattatcaggggtcaatcttcacgatctgcgccaatgtggtgatccaca-tgatatttacagtcccttcggttcc

upper sequence: AT1G64650.2 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: EFJ21113 (Selaginella moellendorffii), 5'ss of exon 2
CTTATGGCTTTGGAAAGGGAGAGATCGGTCAGCTCTTTATTGCTGGTTTTGGATCTTCCATGTTGTTTGGCACCATTGTTGGATCTCTTGCCGACAAACAgtcagcatttcttcttctgaattatacttcacctattgtttgtttggatcttcttcaatgactctgtaacttactctcttaattag
  ||||||||    ||||| || || || | |||||| || ||||| ||||||||||||||| ||||||| || ||||| |||||||| || |||||| ||| |||  |||||  | || |||| | ||    |      | |||  ||   |                                 
ACTATGGCTTCCAGAAGGGGGATATTGGGCGGCTCTTCATCGCTGGCTTTGGATCTTCCATGCTGTTTGGGACGATTGTGGGATCTCTCGCGGACAAATAgtaagc--ttcttggtttggattagaattggaattcacgctctttctatgcgcag-------------------------------

upper sequence: AT1G64650.2 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: EFJ11977 (Selaginella moellendorffii), 5'ss of exon 2
CTTATGGCTTTGGAAAGGGAGAGATCGGTCAGCTCTTTATTGCTGGTTTTGGATCTTCCATGTTGTTTGGCACCATTGTTGGATCTCTTGCCGACAAACAgtcagcatttcttcttctgaattatacttcacctattgtttgtttggatcttcttcaatgactctgtaacttactctcttaattag
  ||||||||    ||||| || || || | |||||| || ||||| ||||||||||||||| ||||||| || ||||| |||||||| || |||||| ||| |||  |||||  | || |||| | ||    |      |||||  ||   |                                 
ACTATGGCTTCCAGAAGGGGGATATTGGGCGGCTCTTCATCGCTGGCTTTGGATCTTCCATGCTGTTTGGGACGATTGTGGGATCTCTCGCGGACAAATAgtaagc--ttcttggtttggattagaattggaattcacgctgtttctatgcgcag-------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86062549|gb|DR358306.1|DR358306
EST:     GGATCTTCCATGTTGTTTGGCACCATTGTTGGATCTCTTGCCGACAAACA                         GGGTCGCAAGAGAGCTTCTATCACCTATTGTATCACCTACATTCTCAGCTG
genomic: GGATCTTCCATGTTGTTTGGCACCATTGTTGGATCTCTTGCCGACAAACAgtcagcattt ... tcttaattagGGGTCGCAAGAGAGCTTCTATCACCTACTGTATCACCTACATTCTCAGCTG
EST: gi|86062544|gb|DR358301.1|DR358301
EST:     GGATCTTCCATGTTGTTTGGCACCATTGTTGGATCTCTTGCCGACAAACA                         GGGTCGCAAGAGAGCTTCTATCACNTATTGTATCACSTASATTCTCAGCTG
genomic: GGATCTTCCATGTTGTTTGGCACCATTGTTGGATCTCTTGCCGACAAACAgtcagcattt ... tcttaattagGGGTCGCAAGAGAGCTTCTATCACCTACTGTATCACCTACATTCTCAGCTG
EST: gi|163974400|gb|ES175130.1|ES175130
EST:     ACCATTGTTGGATCTCTTGCCGACAAACA                         GGGTCGCAAGAGAGCTTCTATCACCTACTGTATCACCTACATTCTCAGCTG
genomic: ACCATTGTTGGATCTCTTGCCGACAAACAgtcagcattt ... tcttaattagGGGTCGCAAGAGAGCTTCTATCACCTACTGTATCACCTACATTCTCAGCTG
EST: gi|86051061|gb|DR346816.1|DR346816
EST:     GGATCTTCCATGTTGTTTGGCACCATTGTTGGATCTCTTGCCGACAAACA                         GGGTCGCAAGAGAGCTTCTATCACCTATTGTATCACCTACATTCTCAGCTG
genomic: GGATCTTCCATGTTGTTTGGCACCATTGTTGGATCTCTTGCCGACAAACAgtcagcattt ... tcttaattagGGGTCGCAAGAGAGCTTCTATCACCTACTGTATCACCTACATTCTCAGCTG
EST: gi|86062548|gb|DR358305.1|DR358305
EST:     GGATCTTCCATGTTGTTTGGCACCATTGTTGGATCTCTTGCCGACAAACA                         GGGTCGCAAGAGAGCTTCTATCACCTATTGTATCACCTACATTCTCAGCTG
genomic: GGATCTTCCATGTTGTTTGGCACCATTGTTGGATCTCTTGCCGACAAACAgtcagcattt ... tcttaattagGGGTCGCAAGAGAGCTTCTATCACCTACTGTATCACCTACATTCTCAGCTG
EST: gi|19876555|gb|AU237386.1|AU237386
EST:     GGATCTTCCATGTTGTTTGGCACCATTGTTGGATCTCTTGCCGACAAACA                         GGGTCGCAAGAGAGCTTCTATCACCTACTGTATCACCTACATTCTCAGCTG
genomic: GGATCTTCCATGTTGTTTGGCACCATTGTTGGATCTCTTGCCGACAAACAgtcagcattt ... tcttaattagGGGTCGCAAGAGAGCTTCTATCACCTACTGTATCACCTACATTCTCAGCTG
EST: gi|125000617|gb|EL072886.1|EL072886
EST:     CTTCCATGTTGTTTGGCACCATTGTTGGATCTCTTGCCGACAAACA                         GGGTCGCAAGAGAGCTTCTATCACCTACTGTATCACCTACATT
genomic: CTTCCATGTTGTTTGGCACCATTGTTGGATCTCTTGCCGACAAACAgtcagcattt ... tcttaattagGGGTCGCAAGAGAGCTTCTATCACCTACTGTATCACCTACATT
EST: gi|116485730|gb|EG528322.1|EG528322
EST:     GGATCTTCCATGTTGTTTGGCACCATTGTTGGATCTCTTGCCGACAAACA                         GGGTCGCAAGAGAGCTTCTATCACCTACTGTATCACCTACATTCTCAGCTG
genomic: GGATCTTCCATGTTGTTTGGCACCATTGTTGGATCTCTTGCCGACAAACAgtcagcattt ... tcttaattagGGGTCGCAAGAGAGCTTCTATCACCTACTGTATCACCTACATTCTCAGCTG