1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GTTCTTCTTACCAAATTCACAAGTCTTCCTCCATTGTTCGAGAATTCACCTAATGCAGCCAAGGAATTGACTATTGCAAgtaagtttctctttttcattattggttttacatgagctatttgctagtaagtttagagttttgctttcaattgcatggagtgttttggatttgtctattc...
species | Arabidopsis thaliana |
transcript | AT1G64520.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TCCATTGTTCGAGAATTCACCTAATGCAGCCAAGGAATTGACTATTGCAA GGGACATTTATGAGCATGCTGTTGTTCTAAGCGTCAAAACCGAGGATCAAGEST: gi|116486373|gb|EG528965.1|EG528965
genomic: TCCATTGTTCGAGAATTCACCTAATGCAGCCAAGGAATTGACTATTGCAAgtaagtttct ... tgtattctagGGGACATTTATGAGCATGCTGTTGTTCTAAGCGTCAAAACCGAGGATCAAG
EST: TCCATTGTTCGAGAATTCACCTAATGCAGCCAAGGAATTGACTATTGCAA GGGACATTTATGAGCATGCTGTTGTTCTAAGCGTCAAAACCGAGGATCAAGEST: gi|116486364|gb|EG528956.1|EG528956
genomic: TCCATTGTTCGAGAATTCACCTAATGCAGCCAAGGAATTGACTATTGCAAgtaagtttct ... tgtattctagGGGACATTTATGAGCATGCTGTTGTTCTAAGCGTCAAAACCGAGGATCAAG
EST: TCCATTGTTCGAGAATTCACCTAATGCAGCCAAGGAATTGACTATTGCAA GGGACATTTATGAGCATGCTGTTGTTCTAAGCGTCAAAACCGAGGATCAAGEST: gi|116486368|gb|EG528960.1|EG528960
genomic: TCCATTGTTCGAGAATTCACCTAATGCAGCCAAGGAATTGACTATTGCAAgtaagtttct ... tgtattctagGGGACATTTATGAGCATGCTGTTGTTCTAAGCGTCAAAACCGAGGATCAAG
EST: TCCATTGTTCGAGAATTCACCTAATGCAGCCAAGGAATTGACTATTGCAA GGGACATTTATGAGCATGCTGTTGTTCTAAGCGTCAAAACCGAGGATCAAGEST: gi|116410781|gb|EG453373.1|EG453373
genomic: TCCATTGTTCGAGAATTCACCTAATGCAGCCAAGGAATTGACTATTGCAAgtaagtttct ... tgtattctagGGGACATTTATGAGCATGCTGTTGTTCTAAGCGTCAAAACCGAGGATCAAG
EST: TCCATTGTTCGAGAATTCACCTAATGCAGCCAAGGAATTGACTATTGCAA GGGACATTTATGAGCATGCTGTTGTTCTAAGCGTCAAAACCEST: gi|116486371|gb|EG528963.1|EG528963
genomic: TCCATTGTTCGAGAATTCACCTAATGCAGCCAAGGAATTGACTATTGCAAgtaagtttct ... tgtattctagGGGACATTTATGAGCATGCTGTTGTTCTAAGCGTCAAAACC
EST: TCCATTGTTCGAGAATTCACCTAATGCAGCCAAGGAATTGACTATTGCAA GGGACATTTATGAGCATGCTGTTGTTCTAAGCGTCAAAACCGAGGATCAAGEST: gi|116486376|gb|EG528968.1|EG528968
genomic: TCCATTGTTCGAGAATTCACCTAATGCAGCCAAGGAATTGACTATTGCAAgtaagtttct ... tgtattctagGGGACATTTATGAGCATGCTGTTGTTCTAAGCGTCAAAACCGAGGATCAAG
EST: TCCATTGTTCGAGAATTCACCTAATGCAGCCAAGGAATTGACTATTGCAA GGGACATTTATGAGCATGCTGTTGTTCTAAGCGTCAAAACCGAGGATCAAGEST: gi|116486365|gb|EG528957.1|EG528957
genomic: TCCATTGTTCGAGAATTCACCTAATGCAGCCAAGGAATTGACTATTGCAAgtaagtttct ... tgtattctagGGGACATTTATGAGCATGCTGTTGTTCTAAGCGTCAAAACCGAGGATCAAG
EST: TCCATTGTTCGAGAATTCACCTAATGCAGCCAAGGAATTGACTATTGCAA GGGACATTTATGAGCATGCTGTTGTTCTAAGCGTCAAAACCGAGGATCAAGEST: gi|116410784|gb|EG453376.1|EG453376
genomic: TCCATTGTTCGAGAATTCACCTAATGCAGCCAAGGAATTGACTATTGCAAgtaagtttct ... tgtattctagGGGACATTTATGAGCATGCTGTTGTTCTAAGCGTCAAAACCGAGGATCAAG
EST: TCCATTGTTCGAGAATTCACCTAATGCAGCCAAGGAATTGACTATTGCAA GGGACATTTATGAGCATGCTGTTGTTCTAAGCGTCAAAACCGAGGATCAAGEST: gi|116486359|gb|EG528951.1|EG528951
genomic: TCCATTGTTCGAGAATTCACCTAATGCAGCCAAGGAATTGACTATTGCAAgtaagtttct ... tgtattctagGGGACATTTATGAGCATGCTGTTGTTCTAAGCGTCAAAACCGAGGATCAAG
EST: TCCATTGTTCGAGAATTCACCTAATGCAGCCAAGGAATTGACTATTGCAA GGGACATTTATGAGCATGCTGTTGTTCTAAGCGTCAAAACCGAGGATCAAGEST: gi|125239192|gb|EL253277.1|EL253277
genomic: TCCATTGTTCGAGAATTCACCTAATGCAGCCAAGGAATTGACTATTGCAAgtaagtttct ... tgtattctagGGGACATTTATGAGCATGCTGTTGTTCTAAGCGTCAAAACCGAGGATCAAG
EST: TTGTTCGAGAATTCACCTAATGCAGCCAAGGAATTGACTATTGCAA GGGACATTTATGAGCATGCTGTTGTTCTAAGCGTCAAAACCGAGGATCEST: gi|116486357|gb|EG528949.1|EG528949
genomic: TTGTTCGAGAATTCACCTAATGCAGCCAAGGAATTGACTATTGCAAgtaagtttct ... tgtattctagGGGACATTTATGAGCATGCTGTTGTTCTAAGCGTCAAAACCGAGGATC
EST: TCCATTGTTCGAGAATTCACCTAATGCAGCCAAGGAATTGACTATTGCAA GGGACATTTATGAGCATGCTGTTGTTCTAAGCGTCAAAACCGAGGATCAAGEST: gi|116486361|gb|EG528953.1|EG528953
genomic: TCCATTGTTCGAGAATTCACCTAATGCAGCCAAGGAATTGACTATTGCAAgtaagtttct ... tgtattctagGGGACATTTATGAGCATGCTGTTGTTCTAAGCGTCAAAACCGAGGATCAAG
EST: TCCATTGTCCGAGAATTCACCTAATGCAGCCAAGGAATTGACTATTGCAA GGGACATTTATGAGCATGCTGTTGTTCTAAGCGTCAAAACCGAGGATCAAG
genomic: TCCATTGTTCGAGAATTCACCTAATGCAGCCAAGGAATTGACTATTGCAAgtaagtttct ... tgtattctagGGGACATTTATGAGCATGCTGTTGTTCTAAGCGTCAAAACCGAGGATCAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTCTTCTTACCAAATTCACAAGTCTTCCTCCATTGTTCGAGAATTCACCTAATGCAGCCAAGGAATTGACTATTGCAAgtaagtttctctttttcattattggttttacatgagctatttgctagtaagtttagagttttgctttcaattgcatggagtgttttggatttgtctattc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttctctt