1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CGCACATGGTCTTGAATGGAAATTGTGTAAGAGTATGAAGAATAAGTCTAGCCAAGTGCTCGATGTTCAATTTGGAGTTTCCAGAAAGAGTCTAAAGATGgtgagagattttgttttgagatgttgaacaagctcttctgctaaacatctatgaatgattcattgattatttttgcag
species | Arabidopsis thaliana |
transcript | AT1G64350.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CAAGTGCTCGATGTTCAATTTGGAGTTTCCAGAAAGAGTCTAAAAGATGEST: gi|116480252|gb|EG522844.1|EG522844
genomic: CAAGTGCTCGATGTTCAATTTGGAGTTTCCAGAAAGAGTCTAAA-GATG
EST: GCCAAGTGCTCGATGTTCAATTTGGAGTTTCCAGAAAGAGTCTAAAGATG GTTGCTGCATATTCTGATGGGTACCTTAGGGTTTTTGAGCTCTTGAATCCAEST: gi|86044893|gb|DR340648.1|DR340648
genomic: GCCAAGTGCTCGATGTTCAATTTGGAGTTTCCAGAAAGAGTCTAAAGATGgtgagagatt ... atttttgcagGTTGCTGCATATTCTGATGGGTACCTTAGGGTTTTTGAGCTCTTGAATCCA
EST: GCCAAGTGCTCGATGTTCAATTTGGAGTTTCCAGAAAGAGTCTAAAGATG GTTGCTGCATATTCTGATGGGTACCTTAGGGTTTTTGAGCTCTTGAATCCAEST: gi|86044886|gb|DR340641.1|DR340641
genomic: GCCAAGTGCTCGATGTTCAATTTGGAGTTTCCAGAAAGAGTCTAAAGATGgtgagagatt ... atttttgcagGTTGCTGCATATTCTGATGGGTACCTTAGGGTTTTTGAGCTCTTGAATCCA
EST: GCCAAGTGCTCGATGTTCAATTTGGAGTTTCCAGAAAGAGTCTAAAGATG GTTGCTGCATATTCTGATGGGTACCTTAGGGTTTTTGAGCTCTTGAATCCAEST: gi|86044884|gb|DR340639.1|DR340639
genomic: GCCAAGTGCTCGATGTTCAATTTGGAGTTTCCAGAAAGAGTCTAAAGATGgtgagagatt ... atttttgcagGTTGCTGCATATTCTGATGGGTACCTTAGGGTTTTTGAGCTCTTGAATCCA
EST: GCCAAGTGCTCGATGTTCAATTTGGAGTTTCCAGAAAGAGTCTAAAGATG GTTGCTGCATATTCTGATGGGTAC-TTAGGGTTTTTGAGCTCTTGAATCCAEST: gi|86044891|gb|DR340646.1|DR340646
genomic: GCCAAGTGCTCGATGTTCAATTTGGAGTTTCCAGAAAGAGTCTAAAGATGgtgagagatt ... atttttgcagGTTGCTGCATATTCTGATGGGTACCTTAGGGTTTTTGAGCTCTTGAATCCA
EST: GCCAAGTGCTCGATGTTCAATTTGGAGTTTCCAGAAAGAGTCTAAAGATG GTTGCTGCATATTCTGATGGGTACCTTAGGGTTTTTGAGCTCTTGAATCCAEST: gi|116457542|gb|EG500134.1|EG500134
genomic: GCCAAGTGCTCGATGTTCAATTTGGAGTTTCCAGAAAGAGTCTAAAGATGgtgagagatt ... atttttgcagGTTGCTGCATATTCTGATGGGTACCTTAGGGTTTTTGAGCTCTTGAATCCA
EST: GCCAAGTGCTCGATGTTCAATTTGGAGTTTCCAGAAAGAGTCTAAAGATG GTTGCTGCATATTCTGATGGGTACCTTAGGGTTTTTGAGCTCTTGAATCCAEST: gi|86044879|gb|DR340634.1|DR340634
genomic: GCCAAGTGCTCGATGTTCAATTTGGAGTTTCCAGAAAGAGTCTAAAGATGgtgagagatt ... atttttgcagGTTGCTGCATATTCTGATGGGTACCTTAGGGTTTTTGAGCTCTTGAATCCA
EST: GCCAAGTGCTCGATGTTCAATTTGGAGTTTCCAGAAAGAGTCTAAAGATG GTTGCTGCATATTCTGATGGGTACCTTAGGGTTTTTGAGCTCTTGAATCCAEST: gi|86044883|gb|DR340638.1|DR340638
genomic: GCCAAGTGCTCGATGTTCAATTTGGAGTTTCCAGAAAGAGTCTAAAGATGgtgagagatt ... atttttgcagGTTGCTGCATATTCTGATGGGTACCTTAGGGTTTTTGAGCTCTTGAATCCA
EST: GCCAAGTGCTCGATGTTCAATTTGGAGTTTCCAGAAAGAGTCTAAAGATG GTTGCTGCATATTCTGATGGGTAC-TTAGGGTTTTTGAGCTCTTGAATEST: gi|86044881|gb|DR340636.1|DR340636
genomic: GCCAAGTGCTCGATGTTCAATTTGGAGTTTCCAGAAAGAGTCTAAAGATGgtgagagatt ... atttttgcagGTTGCTGCATATTCTGATGGGTACCTTAGGGTTTTTGAGCTCTTGAAT
EST: GCCAAGTGCTCGATGTTCAATTTGGAGTTTCCAGAAAGAGTCTAAAGATG GTTGCTGCATATTCTGATGGGTAC-TTAGGGEST: gi|86044894|gb|DR340649.1|DR340649
genomic: GCCAAGTGCTCGATGTTCAATTTGGAGTTTCCAGAAAGAGTCTAAAGATGgtgagagatt ... atttttgcagGTTGCTGCATATTCTGATGGGTACCTTAGGG
EST: GCCAAGTGCTCGATGTTCAATTTGGAGTTTCCAGAAAGAGTCTAAAGATG GTTGCTGCATATTCTGATGGAGTAC-TTAGGGTTTTEST: gi|86044887|gb|DR340642.1|DR340642
genomic: GCCAAGTGCTCGATGTTCAATTTGGAGTTTCCAGAAAGAGTCTAAAGATGgtgagagatt ... atttttgcagGTTGCTGCATATTCTGATGG-GTACCTTAGGGTTTT
EST: GCCAAGTGCTCGATGTTCAATTTGGAGTTTCCAGAAAGAGTCTAAAGATG GTTGCTGCATATTCEST: gi|125032113|gb|EL104382.1|EL104382
genomic: GCCAAGTGCTCGATGTTCAATTTGGAGTTTCCAGAAAGAGTCTAAAGATGgtgagagatt ... atttttgcagGTTGCTGCATATTC
EST: GCCAAGTGCTCGATGTTCAATTTGGAGTTTCCAGAAAGAGTCTAAAGATG GTTGCTGCATATTCTGATGGGTACCTTAGGGTTTTTGAGCTCEST: gi|86044877|gb|DR340632.1|DR340632
genomic: GCCAAGTGCTCGATGTTCAATTTGGAGTTTCCAGAAAGAGTCTAAAGATGgtgagagatt ... atttttgcagGTTGCTGCATATTCTGATGGGTACCTTAGGGTTTTTGAGCTC
EST: GCCAAGTGCTCGATGTTCAATTTGGAGTTTCCAGAAAGAGTCTAAAGATG GTTGCTGCATATTCTGATGGGTAC-TTAGGGTTTTTGAGCTCTTGAATCCAEST: gi|116430790|gb|EG473382.1|EG473382
genomic: GCCAAGTGCTCGATGTTCAATTTGGAGTTTCCAGAAAGAGTCTAAAGATGgtgagagatt ... atttttgcagGTTGCTGCATATTCTGATGGGTACCTTAGGGTTTTTGAGCTCTTGAATCCA
EST: GCCAAGTGCTCGATGTTCAATTTGGAGTTTCCAGAAAGAGTCTAAAGATG GTTGCTGCATATTCTGATGGGTACCTTAGGGTTTTTGAGCTCTTGAATCCAEST: gi|116430791|gb|EG473383.1|EG473383
genomic: GCCAAGTGCTCGATGTTCAATTTGGAGTTTCCAGAAAGAGTCTAAAGATGgtgagagatt ... atttttgcagGTTGCTGCATATTCTGATGGGTACCTTAGGGTTTTTGAGCTCTTGAATCCA
EST: GCCAAGTGCTCGATGTTCAATTTGGAGTTTCCAGAAAGAGTCTAAAGATG GTTGCTGCATATTCTGATGGGTACCTTAGGGTTTTTGAGCTCTTGAATCCAEST: gi|86044878|gb|DR340633.1|DR340633
genomic: GCCAAGTGCTCGATGTTCAATTTGGAGTTTCCAGAAAGAGTCTAAAGATGgtgagagatt ... atttttgcagGTTGCTGCATATTCTGATGGGTACCTTAGGGTTTTTGAGCTCTTGAATCCA
EST: GCCAAGTGCTCGATGTTCAATTTGGAGTTTCCAGAAAGAGTCTAAAGATG GTTGCTGCATATTCTGATGGGTACCTTAGGGTTTTTGAGCTCTTGAATCCA
genomic: GCCAAGTGCTCGATGTTCAATTTGGAGTTTCCAGAAAGAGTCTAAAGATGgtgagagatt ... atttttgcagGTTGCTGCATATTCTGATGGGTACCTTAGGGTTTTTGAGCTCTTGAATCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGCACATGGTCTTGAATGGAAATTGTGTAAGAGTATGAAGAATAAGTCTAGCCAAGTGCTCGATGTTCAATTTGGAGTTTCCAGAAAGAGTCTAAAGATGgtgagagattttgttttgagatgttgaacaagctcttctgctaaacatctatgaatgattcattgattatttttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG