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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCTCCAAATGTTGTGTATAAAGGGAAATTGGATAATCAAAGACGTATTGCTGTTAAAAGGTTTAATAGGAAAGCTTGGCCTGATTCTCGTCAGTTTCTGgtaatttgcttaataaagtctttacctttttatgttaatttggattcttggattttgaatctctggtctttgtttttttatag

Basic information

species Arabidopsis thaliana
transcript AT1G63500.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G63500.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA08G01730.2 (Glycine max), 5'ss of exon 3
AGCTCCAAATGTTGTGTATAAAGGGAAATTGGATAATCAAAGACGTATTGCTGTTAAAAGGTTTAATAGGAAAGCTTGGCCTGATTCTCGTCAGTTTCTGgtaatt-tgcttaa--taaagtctttacctttttatgttaatttggattcttggattttgaatctctggtctttgtttttttatag---------------
 ||||||||||| || |||||||||||| | |||||||| |  || |||||||| ||| |||| || || || |||||||||||  | |  |  ||| ||||||   ||| | |  | | ||  |  |     |||||  |||||   | ||  || || | | |   || |  ||||| || ||                
GGCTCCAAATGTGGTCTATAAAGGGAAACTTGATAATCAGATGCGAATTGCTGTCAAACGGTTCAACAGAAATGCTTGGCCTGAAGCGCAACCATTTTTGgtaagcatgcatcagtttacgtggtgccaacactatgtagatttgctattttaaatgttcattatg-agtatcagttttcttgtatgtttatgctttttat