Sequence
atgc intronic sequence ATGC exonic sequenceACAATGTTACACTTAACTTTGCTAGAAGTGGTGGTCCTGGAGGCCAGAATGTGAACAAATgtgtgaccttgttcttgtgcctttaccttacttttcattgtagtttttagatgtttcaatacttatacttttcccttacag
Basic information
species | Arabidopsis thaliana |
transcript | AT1G62850.3 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT1G62850.3 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GRMZM2G170532_T01 (Zea mays), 5'ss of exon 2
ACAATGTTACACTTAACTTTGCTAGAAGTGGTGGTCCTGGAGGCCAGAATGTGAACAAATgtgtgaccttgttcttgtgc-ctttaccttacttttcattgtag------tttttagatgtttcaatactta--tacttttcccttacag----------
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ATCATGTTACTGTTAATTTTGCAAGAAGTGGTGGTCCTGGTGGTCAGAATGTTAACAAAGgtttcattgttttcccacattctcctttttgtcattccatatagaccatctgcgtcagtttctcatcattgcattggtatttatttacatttgtattttc
upper sequence: AT1G62850.3 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv02s0241g00090.t01 (Vitis vinifera), 5'ss of exon 3
ACAATGTTACACTTAACTTTGCTAGAAGTGGTGGTCCTGGAGGCCAGAATGTGAACAAATgtgtgaccttgttcttgtgcctttaccttacttttcattgtagtttttagatgtttcaatacttatacttttcccttacag--------------------------------------------
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ACCATGTTACTGTGAGTTTTGCAAGAAGTGGTGGGCCTGGAGGTCAGAATGTCAACAAAGgtctgttctttgtcgttt-tatatactaaatctttatttgatttcccttcttacttccctgttttttttttttgatcagactcttcttacttcttattgaggcttatttccattactggttacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|125303429|gb|EL317514.1|EL317514EST: ACTTAACTTTGCTAGAAGTGGTGGTCCTGGAGGCCAGAATGTGAACAAAT TGAATACCAAAGTAGATATGCGCTTCAATGTTAAGAACGCGTATTGG
genomic: ACTTAACTTTGCTAGAAGTGGTGGTCCTGGAGGCCAGAATGTGAACAAATgtgtgacctt ... tcccttacagTGAATACCAAAGTAGATATGCGCTTCAATGTTAAGAACGCGTATTGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ACAATGTTACACTTAACTTTGCTAGAAGTGGTGGTCCTGGAGGCCAGAATGTGAACAAATgtgtgaccttgttcttgtgcctttaccttacttttcattgtagtttttagatgtttcaatacttatacttttcccttacag
- - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - TGGAGG