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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAGACAGCTAGACAGATATTTGGCTCAAAACCAGTTGCGTCTGCCTCACAGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAGgtacatgacagtctctattctttcacagatctctctctttctctatgtactgaataatctgatcttgattttgtgttttggtttttcag

Basic information

species Arabidopsis thaliana
transcript AT1G61520.3
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|47832212|gb|CK121896.1|CK121896
EST:     AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAG                         CAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
genomic: AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
EST: gi|124936780|gb|EL013630.1|EL013630
EST:     CTGCAACTCCACCTGTCAAG                         CAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
genomic: CTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
EST: gi|124918741|gb|EH992552.1|EH992552
EST:     AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAG                         CAAGGAGCCAACAGACCATTGTGGTT
genomic: AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTT
EST: gi|125283950|gb|EL298035.1|EL298035
EST:     CCACCTGTCAAG                         CAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
genomic: CCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
EST: gi|125070045|gb|EL135604.1|EL135604
EST:     CTGCAACTCCACCTGTCAAG                         CAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
genomic: CTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
EST: gi|124814829|gb|EH899695.1|EH899695
EST:     CTCCACCTGTCAAG                         CAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
genomic: CTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
EST: gi|124910209|gb|EH984289.1|EH984289
EST:     AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAG                         CAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGC
genomic: AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGC
EST: gi|125028814|gb|EL101083.1|EL101083
EST:     AAGAAGAGTTCCTTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAG                         CAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTC
genomic: AAGAAGAGTTCC-TTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTC
EST: gi|116427572|gb|EG470164.1|EG470164
EST:     AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAG                         CAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
genomic: AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
EST: gi|124831870|gb|EH916309.1|EH916309
EST:     AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAG                         CAAAGGAGCCAACAGACCATTGTGGTTTGC
genomic: AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAA-GGAGCCAACAGACCATTGTGGTTTGC
EST: gi|124716976|gb|EH808378.1|EH808378
EST:     GAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAAG                         CAAGGAGCCAACAGACCTTTGTGGTTTGC
genomic: GAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAA-Ggtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGC
EST: gi|164087000|gb|ES001543.1|ES001543
EST:     AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAG                         CAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTC
genomic: AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTC
EST: gi|124720284|gb|EH811686.1|EH811686
EST:     CTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAG                         CAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
genomic: CTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
EST: gi|125017260|gb|EL089529.1|EL089529
EST:     GAAGAAGAGTTCCTTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAG                         CAAGGAGCCAACAGACCATTG
genomic: GAAGAAGAGTTCC-TTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTG
EST: gi|125047821|gb|EL120090.1|EL120090
EST:     TTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAG                         CAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
genomic: TTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
EST: gi|125074970|gb|EL138713.1|EL138713
EST:     AAGCTGCTGCAACTCCACCTGTCAAG                         CAAGGAGCCAACAGACCATTGTTGTTTGCTTCATCGCAGAGTCTCTCTTAC
genomic: AAGCTGCTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
EST: gi|124926723|gb|EL004522.1|EL004522
EST:     CAACTCCACCTGTCAAG                         CAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
genomic: CAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
EST: gi|116429319|gb|EG471911.1|EG471911
EST:     AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAG                         CAGGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
genomic: AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
EST: gi|125022159|gb|EL094428.1|EL094428
EST:     GTTGTTAAAGCTGCTGCAACTCCACCTGTCAAG                         CAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
genomic: GTTGTTAAAGCTGCTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
EST: gi|125263605|gb|EL277690.1|EL277690
EST:     AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAG                         CAAGGAGCCAACAGACCATTGTTGGTTTGCTT
genomic: AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGT-GGTTTGCTT
EST: gi|125164505|gb|EL191202.1|EL191202
EST:     AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAG                         CAAGGAGCCAACAGACCATTGTGGTTTGCTTCATC
genomic: AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGCTTCATC
EST: gi|124787605|gb|EH877284.1|EH877284
EST:     CCACCTGTCAAG                         CAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
genomic: CCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
EST: gi|47832033|gb|CK121717.1|CK121717
EST:     AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAG                         CAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
genomic: AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
EST: gi|86058741|gb|DR354498.1|DR354498
EST:     AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAG                         CAAGGAGCAAACAGACCATTGTGGTTTGCATCATCGCAGAGTCTCTCTTAC
genomic: AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
EST: gi|124846894|gb|EH931331.1|EH931331
EST:     AAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAG                         CAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
genomic: AAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
EST: gi|125274441|gb|EL288526.1|EL288526
EST:     AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAG                         CAAGGAGCCAACAAGACCATTGTGGTTTGCTTCATCGCA
genomic: AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACA-GACCATTGTGGTTTGCTTCATCGCA
EST: gi|125247405|gb|EL261490.1|EL261490
EST:     AACTCCACCTGTCAAG                         CAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
genomic: AACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
EST: gi|125273344|gb|EL287429.1|EL287429
EST:     AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAG                         CAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCA
genomic: AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCA
EST: gi|125115637|gb|EL165518.1|EL165518
EST:     CTGCTGCAACTCCACCTGTCAAG                         CAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
genomic: CTGCTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
EST: gi|124765286|gb|EH855416.1|EH855416
EST:     TTGTTAAAGCTGCTGCAACTCCACCTGTCAAG                         CAAGGAGCCAGCAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
genomic: TTGTTAAAGCTGCTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
EST: gi|125303923|gb|EL318008.1|EL318008
EST:     AGAAGAGGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTTAAG                         CAAGGAGCCAACAGACCATTGTGGTTTG
genomic: AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTG
EST: gi|86058743|gb|DR354500.1|DR354500
EST:     AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAG                         CAAGGAGCAAACAGACCATTGTGGTTTGCATCATCGCAGAGTCTCTCTTAC
genomic: AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
EST: gi|125246369|gb|EL260454.1|EL260454
EST:     AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAG                         CAAGGAGCCAACAGACCATTGTG
genomic: AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTG
EST: gi|125035220|gb|EL107489.1|EL107489
EST:     GAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTACAAG                         CAAGGAGCCAACAGACCATTG
genomic: GAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGT-CAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTG
EST: gi|125003059|gb|EL075328.1|EL075328
EST:     CTCCACCTGTCAAG                         CAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
genomic: CTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
EST: gi|86058745|gb|DR354502.1|DR354502
EST:     AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAG                         CAAGGAGCAAACAGACCATTGTGGTTTGCATCATCGCAGAGTCTCTCTTAC
genomic: AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
EST: gi|124825629|gb|EH910495.1|EH910495
EST:     AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAG                         CAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCG
genomic: AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCG
EST: gi|124839411|gb|EH923850.1|EH923850
EST:     CTGCTGCAACTCCACCTGTCAAG                         CAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
genomic: CTGCTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
EST: gi|47828390|gb|CK118074.1|CK118074
EST:     AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAG                         CAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
genomic: AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
EST: gi|125020935|gb|EL093204.1|EL093204
EST:     CTCCACCTGTCAAG                         CAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
genomic: CTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
EST: gi|124948857|gb|EL024557.1|EL024557
EST:     AAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAG                         CAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTA
genomic: AAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTA
EST: gi|124841545|gb|EH925982.1|EH925982
EST:     AAGAAGAGTTCCTTTTGTTTGTTAAAGCTGCTGCAACTCCACCTGTCAAG                         CAAGGAGCCAACAGACC
genomic: AAGAAGAGTTCCTTT-GTT-GTTAAAGCTGCTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACC
EST: gi|124863211|gb|EH947648.1|EH947648
EST:     AAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAG                         CAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
genomic: AAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
EST: gi|125066383|gb|EL133276.1|EL133276
EST:     AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAG                         CAAGGAGCCAACA
genomic: AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACA
EST: gi|124911359|gb|EH985439.1|EH985439
EST:     GAAGAAGAGTTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAG                         CAAGGAGCCAACAGACCATTGTGGTTTGCTTCA
genomic: GAAGAAGAG-TTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGCTTCA
EST: gi|86058746|gb|DR354503.1|DR354503
EST:     AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAG                         CAAGGAGCAAACAGACCATTGTGGTTTGCATCATCGCAGAGTCTCTCTTAC
genomic: AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
EST: gi|124742354|gb|EH833516.1|EH833516
EST:     AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAG                         CAAGGAGCCAACAGACCATTGTGGTTTGC
genomic: AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGC
EST: gi|124804830|gb|EH892391.1|EH892391
EST:     TTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAG                         CAAGGAGCCAACAGACCATTGTGGTTTGCTTCATACGCAGAGTCTCTCTTA
genomic: TTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGCTTCAT-CGCAGAGTCTCTCTTA
EST: gi|125212647|gb|EL227601.1|EL227601
EST:     AGAAGAAGAGTTCCTCTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAG                         CAAGGAGCCAACAGACCATTGTGG
genomic: AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGG
EST: gi|124862656|gb|EH947093.1|EH947093
EST:     AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAG                         CAAGGAGCCAACAGACCATTGTGGTTTGCTTC
genomic: AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGCTTC
EST: gi|124969367|gb|EL043275.1|EL043275
EST:     AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAG                         CAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGT
genomic: AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGT
EST: gi|124982654|gb|EL055444.1|EL055444
EST:     GAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAAG                         CAAGGAGCCAACAGACCATTGTG
genomic: GAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAA-Ggtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTG
EST: gi|125033566|gb|EL105835.1|EL105835
EST:     AACTCCACCTGTCAAG                         CAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
genomic: AACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
EST: gi|164088827|gb|ES091466.1|ES091466
EST:     AGAAGAAGAGTTCCTTTGTTGTTAAAGCTACTGCAACTCCACCTGTCAAG                         CAAGGAGCCAACAGACCATT
genomic: AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATT
EST: gi|124799429|gb|EH889108.1|EH889108
EST:     AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAG                         CAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCG
genomic: AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCG
EST: gi|125306427|gb|EL320512.1|EL320512
EST:     TTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAG                         CAAGGAGCCAACAGACCATTGTGGTTTGCTTCAATCGCAGAGTCTCTCTTA
genomic: TTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGCTTCA-TCGCAGAGTCTCTCTTA
EST: gi|164118920|gb|ES141306.1|ES141306
EST:     CTCCACCTGTCAAG                         CAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
genomic: CTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
EST: gi|164102330|gb|ES202463.1|ES202463
EST:     GAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTAGCAACTCCACCTGTCAAG                         CAAGGAGCCAAC
genomic: GAAGAAGAGTTCCTTTGTTGTTAAAGCTGCT-GCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAAC
EST: gi|124909815|gb|EH983895.1|EH983895
EST:     AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAG                         CAAGGAGCCAAC
genomic: AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAAC
EST: gi|125282779|gb|EL296864.1|EL296864
EST:     TCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAG                         CAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
genomic: TCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
EST: gi|152035165|gb|BP846580.2|BP846580
EST:     GAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGGTCAAG                         CAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTA
genomic: GAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCT-GTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTA
EST: gi|124864345|gb|EH948782.1|EH948782
EST:     CTCCACCTGTCAAG                         CAAGGAGCCAACAGGCCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
genomic: CTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
EST: gi|125024065|gb|EL096334.1|EL096334
EST:     AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCCGCAACTCCACCTGTCAAG                         CAAGGAGCCAACAGACC
genomic: AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACC
EST: gi|124730647|gb|EH822049.1|EH822049
EST:     GTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCGAG                         CAAGGAGCCAACAGACCATTGTGGTT
genomic: GTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTT
EST: gi|125203323|gb|EL218277.1|EL218277
EST:     AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAG                         CAAGGAGCCAACAGACCATTGTGGTTTGCTT
genomic: AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGCTT
EST: gi|47828074|gb|CK117758.1|CK117758
EST:     AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAG                         CAAGGAGCCAACAGACCATTGTGGTTTGCCTCATCGCAGAGTCTCTCTTAC
genomic: AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
EST: gi|125085438|gb|EL145278.1|EL145278
EST:     AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAG                         CAAGGAGCCAACAGACCATTGTGGTT
genomic: AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTT
EST: gi|125157361|gb|EL186505.1|EL186505
EST:     TTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAG                         CAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
genomic: TTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
EST: gi|125071067|gb|EL136251.1|EL136251
EST:     AGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAG                         CAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTA
genomic: AGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTA
EST: gi|47829362|gb|CK119046.1|CK119046
EST:     AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAG                         CAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
genomic: AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
EST: gi|47828850|gb|CK118534.1|CK118534
EST:     AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAG                         CAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
genomic: AGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTCTCTCTTAC
EST: gi|164081651|gb|ES001462.1|ES001462
EST:     GAAGAAGAAG-TCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAG                         CAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTC
genomic: GAAGAAG-AGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAGgtacatgaca ... ggtttttcagCAAGGAGCCAACAGACCATTGTGGTTTGCTTCATCGCAGAGTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCAGACAGCTAGACAGATATTTGGCTCAAAACCAGTTGCGTCTGCCTCACAGAAGAAGAGTTCCTTTGTTGTTAAAGCTGCTGCAACTCCACCTGTCAAGgtacatgacagtctctattctttcacagatctctctctttctctatgtactgaataatctgatcttgattttgtgttttggtttttcag

- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC